BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928405
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07310.1 | Symbols: | Protein of unknown function (DUF760) ... 1855 0.0
> AT3G07310.1 | Symbols: | Protein of unknown function (DUF760)
| chr3:2327818-2329801 REVERSE LENGTH=1470
Length=1470
Score = 1855 bits (1004), Expect = 0.0
Identities = 1103/1150 (96%), Gaps = 10/1150 (1%)
Strand=Plus/Plus
Query 7 GCTC-AATCTGATCAATGGATAGTAGTTGTCTCTCTAATCAAACGGCGCTTCAGTTTCTC 65
|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 110 GCTCAAATCTGATCAATGG--A-TAGTTGTCTCTCTAATCAAACGGCGCTTCAGTTTCTC 166
Query 66 CCGTCGCGTTCCAGGAGACAGAGCGGCGATGGGGGAGGCGGTGGTTTTGTTATTCCGGCG 125
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 167 CCGTCGCGTTCCAGGAGACAGAGCGGCGAT---GGAGGCGGTGGTTTTGTTATTCCGGCG 223
Query 126 AGGAGGAAGATCCAGTATAGCTCGATGGTTGTGGTTGCGGCGGCGGGACCGAGTCGGTGT 185
| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 224 AAGAGGAAGATCCAGTATAGTTCGATGGTTGTGGTTGCGGCGGCGGGACAGAGTCGGTGT 283
Query 186 GAGCCTGGAAGCAGTCTAAACGCGCCGCTTGAGCCACGATCGGCGCAGGGGAGGTTTCTG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GAGCCTGGAAGCAGTCTAAACGCGCCGCTTGAGCCACGATCGGCGCAGGGGAGGTTTCTG 343
Query 246 AGAAGCGTGTTGCTAAACAAACGGCAGCTATTTCATTACGCCGCCGCTGATGAGCTTAAG 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 344 AGAAGCGTGTTGCTAAACAAACGGCAGCTATTTCATTACGCCGCCGCTGATGAGCTAAAG 403
Query 306 CAACTGGCTGATGATAGGGAAGCTGCTTTAGCTCGTATGTCTCTCAGCTCTGGTTCCGAT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CAACTGGCTGATGATAGGGAAGCTGCTTTAGCTCGTATGTCTCTCAGCTCTGGTTCCGAT 463
Query 366 GAGGCTTCTCTCCACAGAAGGATAGCTCAACTCAAGGAACGTTACTGCAAAACTGCAGTC 425
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 464 GAGGCTTCTCTCCACAGAAGGATAGCTGAACTCAAGGAACGCTACTGTAAAACTGCAGTC 523
Query 426 CAAGACATAATGTACATGCTAATCTTCTACAAATACTCCGAGATAAGAGTCCCGCTTGTT 485
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 524 CAAGACATAATGTACATGTTAATCTTTTACAAATACTCCGAGATAAGAGTCCCTCTTGTT 583
Query 486 CCAAAGCTATCTAGATGCATCTACAATGGAAGACTCGAGATCTGGCCTTCAAAAGACTGG 545
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 584 CCAAAGCTATCCAGATGCATCTATAATGGAAGACTCGAGATCTGGCCTTCAAAAGACTGG 643
Query 546 GAGTTAGAGTCAATTCACAGCTGCGATACCCTTGAGATCATCAAAGAACATGTAAGCGCA 605
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 644 GAGTTAGAGTCAATTTACAGCTGCGATACCCTTGAGATCATCAAAGAACACGTTAGCGCA 703
Query 606 GTCATCGGATTACGGGTCAATTCATGTGTGACTGACAATTGGGCAACAACCCAGATACAG 665
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 704 GTCATCGGATTACGGGTCAACTCATGTGTGACTGACAATTGGGCAACAACGCAGATACAG 763
Query 666 AAACTGCATCTCAGGAAAGTATACGCTGCCTCGATCTTGTACGGTTACTTCTTGAAATCG 725
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 764 AAACTGCATCTCAGGAAAGTATATGCTGCCTCGATCTTGTACGGTTACTTCTTGAAATCA 823
Query 726 GCTTCCCTAAGGCATCAGCTTGAGTGTTCCTTTTCAGATCTCCATGGAAGCGGATATCTG 785
|||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 824 GCTTCCCTAAGGCACCAGCTTGAGTGTTCCTTATCAGATATTCATGGAAGCGGATATCTG 883
Query 786 AAAAGTCCTATCTTTGGATGCTCTTTCACAACGAGCACTGCACAGATCTCCAACAAGCAG 845
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 884 AAAAGTCCCATCTTTGGATGCTCATTCACAACGGGCACTGCACAGATCTCCAACAAGCAG 943
Query 846 CAGCTGAGACATTACATCTCAGGGTTCGATCCCGAGACATTGCAGAGATGCGCAAAACCA 905
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 944 CAGCTGAGACATTACATCTCAGACTTTGATCCCGAGACATTGCAGAGATGCGCAAAACCA 1003
Query 906 AGGACAGAGGAGGCAAGGAATCTGATAGAGAAGCAAAGTTTGGCCCTTTTTGGCACGGAA 965
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1004 AGGACAGAGGAGGCAAGGAATCTGATAGAGAAGCAAAGTTTGGCTCTTTTTGGCACGGAA 1063
Query 966 GAGAGTGATGAGACAATCGTGACATCGTTTTCGAGTCTGAAGCGGTTGGTTCTCGAGGCT 1025
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GAGAGTGATGAGACCATAGTGACATCGTTTTCGAGTCTGAAGCGGTTGGTTCTCGAGGCT 1123
Query 1026 GTGGCGTTTGGGATATTCCTGTGGGACACGGAATTGTATGTAGATGGTGCATATAAGCTT 1085
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GTGGCGTTTGGGACATTCCTGTGGGACACGGAATTGTATGTAGATGGTGCATATAAGCTG 1183
Query 1086 AAGGAGAATAATGGGAATGCAGAAGAACAAGAAGGAAAGAGAAGCATATGATGAACCAGT 1145
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1184 AAGGAGAAT---GGGAATGCAGAAGAACAAGAAGGAAAGAAAAGCATATGATGAACAAGT 1240
Query 1146 TTGGTTAGAA 1155
|||||||||
Sbjct 1241 CTGGTTAGAA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5