BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928451
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07670.1 | Symbols: | Rubisco methyltransferase family prot... 2510 0.0
> AT3G07670.1 | Symbols: | Rubisco methyltransferase family protein
| chr3:2451608-2454860 FORWARD LENGTH=1801
Length=1801
Score = 2510 bits (1359), Expect = 0.0
Identities = 1481/1542 (96%), Gaps = 0/1542 (0%)
Strand=Plus/Plus
Query 9 TTTCTCCTTTCCAATGGCAAAAGCTTGTGTCTTGCAGTCTACTCTCCTCCCAGCTTACTC 68
|||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 31 TTTCTCTTTTCCGATGGCAAAAGCTTGCCTCTTGCAGTCTACTCTACTCCCAGCTTACTC 90
Query 69 TCCGCTTCACAAGCTCCGTAATCAAAACTTCACCATCTCTTTCCCACCGCTTCCGGTGTC 128
||| |||||||| || |||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 91 TCCACTTCACAAACTTCGTAATCAAAACATCACCCTCTCTTTCTCACCGCTTCCGCTGTC 150
Query 129 CCGATGCCGTCCCGGAATCCACTGCTCAGTTTCGGCCGGTGAGACCACGACACGATCCGT 188
||||||||||||||||||||||||||||||||||||||||||||| || | || |||| |
Sbjct 151 CCGATGCCGTCCCGGAATCCACTGCTCAGTTTCGGCCGGTGAGACTACAATACAATCCAT 210
Query 189 GGAGGAAGCTCCGGAGATATCATGGGGCTGCGAGATAGATTCACTTGAGAACGCTACTTC 248
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 211 GGAGGAAGCTCCGAAGATATCATGGGGATGCGAGATTGATTCACTTGAGAACGCTACTTC 270
Query 249 TCTTCAGAACTGGCTCTCTGATTCAGGTCTTCCTCCGCAGAAAATGGCCATTGATAGAGT 308
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 271 TCTTCAGAACTGGCTCTCTGATTCAGGTCTCCCTCCGCAGAAAATGGCTATTGATAGAGT 330
Query 309 CGACATCGGTGAGCGAGGCCTCGTCGCTTCACAGAATCTCAGAAAAGGAGAGAAATTGCT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CGACATCGGTGAGCGAGGCCTCGTCGCTTCACAGAATCTCAGAAAAGGAGAGAAATTGCT 390
Query 369 CTTCGTTCCTCCTTCTCTCGTCATCAGTGCCGATTCCGAATGGACCAACCCAGAAGCTGG 428
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 391 CTTCGTTCCTCCTTCTCTCGTCATCAGTGCTGATTCCGAATGGACCAACGCAGAAGCTGG 450
Query 429 TGAAGTGATGAAACGTTATGATGTTCCAGATTGGCCTTTGCTCGCCACTTATCTTATAAG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGAAGTGATGAAACGTTATGATGTTCCAGATTGGCCTTTGCTCGCCACTTATCTTATAAG 510
Query 489 TGAAGCAAGTCTTCAGAAAAGTTCAAGATGGTTTAACTACATCTCTGCTCTTCCACGACA 548
||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 511 TGAAGCAAGTCTTCAGAAAAGCTCAAGATGGTTTAACTATATCTCAGCTCTTCCCCGACA 570
Query 549 ACCTTACTCACTTTTGTACTGGACTCGGGCAGAGCTTGATATGTATTTGGAAGCTTCGCA 608
||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 571 ACCTTACTCGCTTTTATACTGGACTCGGACAGAGCTTGATATGTACTTGGAAGCTTCTCA 630
Query 609 GATTCGAGAACGGGCGATTGAAAGAATCACGAATGTTGTTGGAACTTATGAAGATCTAAG 668
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 631 GATTCGAGAACGGGCAATTGAAAGAATCACCAATGTTGTTGGAACTTATGAAGATCTAAG 690
Query 669 AAGCAGGATATTTTCCAAACACCCTCACCTTTTCCCTAAAGAGGTTTTCAATGATGAGAC 728
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 691 AAGCAGGATATTTTCCAAACACCCTCAACTTTTCCCTAAAGAGGTTTTCAATGATGAGAC 750
Query 729 ATTTAAGTGGTCTTTTGGAATCCTATTCTCACGGTTGGTACGGTTGCCGTCTATGGATGG 788
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 751 ATTTAAGTGGTCTTTTGGAATCCTATTCTCACGGTTGGTGCGGTTGCCTTCTATGGATGG 810
Query 789 AAGATTTGCCTTAGTTCCTTGGGCAGATATGCTTAATCATAATTGTGAGGTTGAGACGTT 848
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AAGATTTGCCTTAGTTCCATGGGCAGATATGCTTAATCATAATTGTGAGGTTGAGACGTT 870
Query 849 CCTGGATTATGATAAGTCTTCAAAAGGAGTTGTCTTTACAACAGATCGACCATATCAACC 908
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CCTGGATTATGATAAATCTTCAAAAGGAGTTGTCTTTACAACAGATCGACCATATCAACC 930
Query 909 AGGTGAGCAGGTTTTCATATCGTATGGGAATAAATCTAACGGAGAGCTATTATTATCTTA 968
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 931 AGGTGAGCAGGTTTTCATATCCTATGGGAATAAATCTAACGGAGAGCTATTGTTATCTTA 990
Query 969 TGGGTTTGTTCCCAGAGAAGGAACCAATCCTAGTGATTCAGTAGAACTAGCATTGTCACT 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 991 TGGGTTTGTTCCCAGAGAAGGAACCAATCCTAGTGATTCAGTAGAACTAGCATTATCACT 1050
Query 1029 GAGGAAAAACGATAAGTGTTACAAAGAAAAGCTGTATGCTTTAAAGAAACACGGATTATC 1088
||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1051 TAGGAAAAACGATAAGTGTTACGAGGAAAAGCTGGATGCTTTAAAGAAACACGGATTATC 1110
Query 1089 CACACCTCAATGCTTCCCCGTAAGGATAACAGGTTGGCCAATGGAGCTAATGGCATATGC 1148
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1111 GACACCTCAATGCTTTCCCGTAAGGATAACGGGTTGGCCAATGGAGCTAATGGCATATGC 1170
Query 1149 TTATCTAGTGGTGAGCTCGCCAGATATGGGAAACAACTTTGAAGAGATGGCGAAAGCTGC 1208
|||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1171 TTATCTTGTGGTGAGCCCTCCAGATATGAGAAACAACTTTGAAGAGATGGCGAAAGCTGC 1230
Query 1209 TTCAAATAAGACATCAACAAAGAATGATCTAAAATATCCTGAAATCGAGGAAGATGCATT 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1231 TTCAAATAAGACATCAACAAAGAATGATCTAAAATATCCTGAAATCGAGGAAGACGCATT 1290
Query 1269 GCAGTTCATACTGGACTCATGTGAAACAAGCATATCAAAGTACAGCCGATTTTTAAAGGA 1328
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1291 GCAGTTCATACTGGACTCATGCGAAACAAGCATATCAAAGTACAGCCGATTTCTAAAGGA 1350
Query 1329 AAGTGGATCAATGGATTTGGACATAACATCTCCAAAACAGTTGAACCGAAAAGCGTTTCT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 AAGTGGATCAATGGATTTGGACATAACATCTCCAAAACAGTTGAACCGAAAAGCGTTTCT 1410
Query 1389 GAAACAGCTAGCTGTAGACTTGTCCACTAGCGAGCGCAGGATACTGTACCGTGCCCAATA 1448
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1411 GAAACAGCTAGCTGTAGACTTGTCCACTAGTGAGCGCAGGATACTGTACCGTGCTCAATA 1470
Query 1449 CATTCTGAGGAGGAGACTGAGAGATATTAGAAGTGGTGAGCTGAAGGCTCTACGGCTCTT 1508
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1471 CATTCTGAGGAGGAGACTGAGAGATATCAGAAGTGGTGAGCTGAAGGCTCTACGGCTCTT 1530
Query 1509 CAGTGGACTTAGGAACTTCTTCAAGTGAGTGTTGAATGAGGA 1550
|||||||||||||||||||||||||||| |||||||||||||
Sbjct 1531 CAGTGGACTTAGGAACTTCTTCAAGTGAATGTTGAATGAGGA 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5