BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928515
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08650.2 | Symbols: | ZIP metal ion transporter family | ch... 2976 0.0
> AT3G08650.2 | Symbols: | ZIP metal ion transporter family |
chr3:2624461-2627370 REVERSE LENGTH=2155
Length=2155
Score = 2976 bits (1611), Expect = 0.0
Identities = 1749/1817 (96%), Gaps = 4/1817 (0%)
Strand=Plus/Plus
Query 21 ATCAAAATGATGCATTCAAGCTGCAAACGACTTCTGCTGCTTCTATTCTTATTTGTCGTT 80
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 129 ATCAAAATGATGCATTCAAGCTGCAAAGGACTTGTGCTGCTTCTATTCTTATTTGTCGTT 188
Query 81 GTATTCATTCGG-AACACCGACGCAAATTCTCAGTGGGAGATTTCACATAAAGTTAGAGC 139
||||||||| || |||||||| || ||| ||||||||||| ||||||||||||| |||||
Sbjct 189 GTATTCATT-GGAAACACCGATGCGAATGCTCAGTGGGAGGTTTCACATAAAGTAAGAGC 247
Query 140 TTCTCCCCATGAAAACATGGGACGAAATGTTATTGATGGAAGTGGTGTAGAGAAGACGTT 199
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 248 TTCTCCCCATGAAAACATGGGACGTAATGTTATTGACGGAAGTGGTGTAGAGAAAACATT 307
Query 200 GCATGACATTGGAATGGGTGAAAAGAGAGGCACTCACAACAAAGTCTCAGTCTCAACGGT 259
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 308 ACATGACATTGGAATGGGTGAAAAGAGAGGCACTCACAACAAAGTTTCAGTCTCAACAGT 367
Query 260 TGCATTGTTCACCTTGGCTATGGCTGCTGCCACTGGGTTAGGTGCTGTGCCCTTCTTCTT 319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGCGTTGTTCACCTTGGCTATGGCTGCTGCCACTGGGTTAGGTGCTGTGCCCTTCTTCTT 427
Query 320 TGTTGAGCTTGATCCTCAATGGGCTGGAATATGCAATGGTATGGCGGCTGGTGTGATGTT 379
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 428 TGTTGAGCTTGATCCTCAATGGGCTGGAATTTGCAATGGCATGGCTGCTGGTGTGATGTT 487
Query 380 GGCCGCTAGCTTTGATCTTGTTAAGGAAGGGCAGGAGCATGGCTCTGGAAACTGGGTTGT 439
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 GGCCGCTAGCTTTGATCTTGTTAAGGAAGGGCAGGAACATGGCTCTGGAAACTGGGTTGT 547
Query 440 TACTGGGATCCTAGCCGGTGCTTTGTTCATATGGCTATGTAAGCAGATTCTTGAACAATA 499
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 548 TACTGGGATCCTAGCCGGTGCTTTGTTCATTTGGCTCTGTAAGCAGATTCTTGAACAATA 607
Query 500 TGGTGAAGTTAGTATGCTGGATATTAAAGGTGCAGATGCAACTAAAGTTGTTCTCGTCAT 559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 608 TGGTGAAGTTAGTATGCTGGATATTAAAGGCGCAGATGCAACTAAAGTTGTTCTCGTCAT 667
Query 560 AGGAATTATGACACTTCATTCTTTTGGGGAAGGATCAGGGGTTGGTGTATCGTTCGCTGG 619
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 668 AGGAATTATGACACTTCATTCTTTCGGGGAAGGATCAGGGGTTGGTGTATCATTCGCTGG 727
Query 620 TTCAAAGGGTTTTAGTCAAGGGCTTCTGGTCACTTTGGCCATAGCTGTTCATAACATTCC 679
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CTCAAAAGGTTTTAGCCAAGGGCTTCTGGTCACTTTGGCCATAGCTGTTCATAACATTCC 787
Query 680 AGAAGGGTTGGCTGTTAGCATGGTGCTGGCATCAAGGGGTGTCTCTCCACAAAATGCCAT 739
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 AGAAGGGTTGGCTGTTAGCATGGTGTTGGCATCAAGGGGTGTCTCTCCACAAAATGCCAT 847
Query 740 GCTCTGGAGTATAATAACATCCTTACCTCAGCCTCTCGTCGCTGTGCCAGCTTTTTTATG 799
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 848 GCTCTGGAGTATAATAACATCCTTACCTCAGCCTCTCGTCGCCGTGCCAGCTTTTTTATG 907
Query 800 CGCTGATGCGTTCAGCAAGTTTTTGCCTTTTTGCACTGGATTCGCTGCCGGATGCATGAT 859
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 908 CGCTGATGCGTTCAGCAAGTTTTTGCCTTTTTGCACTGGATTTGCTGCCGGATGCATGAT 967
Query 860 TTGGATGGTTATTGCTGAAGTGCTTCCTGATGCATTTAAGGAAGCGTCTCCGTCGCAAGT 919
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 968 TTGGATGGTTATTGCTGAAGTGCTTCCTGATGCTTTTAAGGAAGCGTCTCCTTCGCAAGT 1027
Query 920 GGCATCTGCAGCCACAATATCAGTAGCATCCATGGAAGCTCTTAGCACTCTTTTCGAGAG 979
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GGCATCTGCAGCCACCATATCAGTAGCATCCATGGAAGCTCTTAGCACTCTTTTCGAGAG 1087
Query 980 TTTCACACATGATTACAACTCAGAGGATGCTTCTGGCTTCTTCGTTTCACTCCTCTTTGG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TTTCACACATGATTACAACTCAGAGGATGCTTCTGGCTTCTTCGTTTCACTCCTCTTTGG 1147
Query 1040 TCTGGGTCCATTGCTTGGGGGAGTATTTCTGGTTGCATCAGCAGTGACCTTCCGTCTCCA 1099
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1148 TCTGGGTCCATTGCTTGGGGGAGTATTTCTGGTTGCATCGGCAGTCACCTTCCGTCTCCA 1207
Query 1100 GCACGCCCTTCTCATGGGAGTAGCCTCAGGCATTGCTTTTGTCCTTAGTCTCTGGCGCCC 1159
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1208 GCACGCCCTTCTCATGGGAGTTGCCTCAGGCATTGCTTTTGTCCTTGGTCTCTGGCGCCC 1267
Query 1160 GCTTCAACTGCTGCTATCCGCAAAAATGGGATTTATCCCTCTGGTTAGTCTACTTGCAGT 1219
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1268 ACTTCAACTGCTGCTATCCGCAAAAATGGGATTAATCCCTCTGGTTAGTCTACTTGCAAT 1327
Query 1220 TGGAGCCGGGCTGAGCTATTTCACTAGCTCGACAATCCTGAATGTAACTTGTCGGAAAAA 1279
|||||| || |||||| ||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 1328 TGGAGCTGGACTGAGCCATTTCACTAGCTCAACCATCCTGAATGTAACTGGTCGGAAAAA 1387
Query 1280 GTCCCGGGCTGGCAGTTTAATAAACCCAGTAACCAATTTTCCAACCAGTGTGATAACACT 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GTCCCGGGCTGGCAGTTTAATAAACCCAGTAACCAATTTTCCAACCAGTGTGATAACACT 1447
Query 1340 CCAATCATTATTAGCGTGTGGAACGGTTGGGTTCCATGCACTAGCAGAGGGGCTTGCTCT 1399
|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1448 CCAATCATTATTAGCGTGTGGAGCGGTTGGGTTCCATGCATTAGCCGAGGGGCTTGCTCT 1507
Query 1400 TGGGGTGGCTGCTCCAAATGCTTATGGACTTGGCCGACACATGGTACTCCCGGTTTCCCT 1459
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1508 CGGGGTGGCTGCTCCAAATGCTTATGGCCTTGGCCGACATATGGTTCTCCCGGTTTCCCT 1567
Query 1460 ACACGGGCTCCCAAGAGGGACAGCGGTTGCAAGCTGTGTCTTCGGGG-TCACTGACAGTT 1518
|||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||
Sbjct 1568 ACACGGGCTCCCAAGAGGGACAGCGGTTGCAAGCTGTGTCTTTGGGGCT-ACAGACAGTT 1626
Query 1519 GGCACGCAGCTCTTGCAGCAGCAGCTTTGATAGGATTTGTGGGACCCATATCGGCGATAG 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1627 GGCACGCAGCTCTTGCAGCAGCAGCTTTGATAGGATTTGTGGGACCCATATCGGCCATAG 1686
Query 1579 GATCCATATTAGCCGGGATAGATTACAGCGGACTGGACCACGTGATGGTTGTGGCGTGCG 1638
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1687 GATCCATATTAGCAGGGATAGATTACAGCGGACTGGACCACGTGATGGTGGTGGCGTGCG 1746
Query 1639 GTGGATTACTACCCAGCTTCTGGCAGGTAATTAAGAGAGCGGTGAGGTTAGAGAGAAGGA 1698
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1747 GTGGATTACTACCCAGCTTCTGGCAGGTGATTAAGAGAGCAGTGAGGTTAGAGAGAAGGA 1806
Query 1699 AAGGCAGTGTGGGGATGGTGCTGGGACTAGCGTGTGCCGTTGTGTGTCTGACTTTCACGA 1758
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1807 AAGGCAGTGTGGGGATGGTGCTGGGACTAGCGTGTGCGGTTGTGTGTCTGACTTTCACGA 1866
Query 1759 GACTCGTGTGCTTGCACACACCCTACTGCAATTCTGCACCTGAGGCTGTTAGATGATGAC 1818
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1867 GACTTGTGTGCTTGCACACACCCTACTGCAATTCTGCACCTGAGGCTGTTAGGTGATGAC 1926
Query 1819 TCCTTGTGAACTCACAC 1835
||||||||||| |||||
Sbjct 1927 TCCTTGTGAACACACAC 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5