BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928555
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09010.1 | Symbols: | Protein kinase superfamily protein | ... 1938 0.0
> AT3G09010.1 | Symbols: | Protein kinase superfamily protein
| chr3:2749953-2752276 FORWARD LENGTH=1704
Length=1704
Score = 1938 bits (1049), Expect = 0.0
Identities = 1169/1227 (95%), Gaps = 8/1227 (1%)
Strand=Plus/Plus
Query 2 ATTTTTGTCGAGTGGTTGTGATGCGTTATAATTGTTTCGGACTTCTTGCTATGTGCAAAG 61
||||||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||| |
Sbjct 314 ATTTTTGTC-TGTGTTTGTGATGCGTTATAATTGCTTCGGACTTCTAGATATGTGCAACG 372
Query 62 GAAGTGATCGTCTTGGACAAAGAGAAGCTGAAGAGATTTGCACCAACAATGTGAGGGTCT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GAAGTGATCGTCTTGGACAAAGAGAAGCTGAAGAGATTTGCACCAACAATGTGAGGGTCT 432
Query 122 TTTCATATAACTCATTAAGATCTGCCACTGATGGTTTCCATCCAACGAAGAGAATCGGAG 181
|||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 433 TTTCATATAATTCATTAAGATCAGCCACTGATAGTTTCCATCCAACGAACAGAATCGGAG 492
Query 182 GTGGTGGCTATGGAGTTGTCTTTAAGGGAGTTTTAAGAGATGGCACACAAGTAGCTGTGA 241
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 493 GTGGTGGCTATGGCGTTGTCTTTAAGGGAGTTTTGAGAGATGGCACACAAGTAGCTGTGA 552
Query 242 AGTCACTATCAGCAGAATCTAAACAAGGGACACGCGAGTTCTTGACCGAGATTAACTTGA 301
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AATCACTATCAGCAGAATCTAAACAAGGGACACGCGAGTTCTTGACCGAGATTAACTTGA 612
Query 302 TATCGAACATTCATCATCCTAACCTTGTTAACCTCATTGGCTGCTGCATCGAAGGGAACA 361
|||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 613 TATCAAACATTCATCATCCTAACCTTGTTAAACTCATCGGTTGCTGCATCGAAGGGAACA 672
Query 362 ACCGGATTCTCGTATATGAGTACCTTGAGAACAACAGTCTTGCTAGTGTTTTGCTTGGTT 421
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ATCGGATTCTTGTCTATGAGTACCTTGAGAACAACAGTCTTGCTAGTGTTTTGCTTGGTT 732
Query 422 CAAGGAGTAGATATGTACCGCTTGATTGGTCCAAAAGAGCTGCGATTTGTGTTGGGACAG 481
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 733 CAAGGAGTAGATATGTACCGCTTGATTGGTCCAAAAGAGCTGCGATTTGCGTTGGGACAG 792
Query 482 CTTCGGGTTTAGCTTTCCTTCACGAGGAAGTTGAACCTCAGGTTGTTCACCGTGACATTA 541
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 793 CTTCGGGTTTAGCTTTCCTTCACGAGGAAGTCGAACCTCATGTTGTTCACCGTGACATCA 852
Query 542 AGGCGAGTAATATCTTACTAGAC-CGAAACTTTTCTCCCAAAATTGGAGATTTCGGGTTG 600
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 853 AGGCGAGTAATATCTTACTAGACTC-AAACTTTTCTCCCAAAATTGGTGATTTCGGGTTG 911
Query 601 GCTAAGCTTTTTCCAGACAATGTCACTCATGTCAGTACCCGAGTCGCTGGAACAGTGGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GCTAAGCTTTTTCCAGACAATGTCACTCATGTCAGTACCCGAGTCGCTGGAACAGTGGGA 971
Query 661 TACTTGGCTCCAGAATATGCACTTCTTGGTCAATTGACaaaaaaaGCGGACGTTTACAGC 720
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 972 TACTTGGCTCCAGAATATGCACTTCTTGGTCAACTGACAAAAAAAGCAGACGTTTACAGC 1031
Query 721 TTCGGGATACTTGTGCTTGAGGTCATTAGTGGTAATAGTAGCACCAGAGCCGCCTTTGGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TTCGGGATACTTGTGCTTGAGGTCATTAGTGGTAATAGTAGCACCAGAGCCGCCTTTGGA 1091
Query 781 GACGATTACATGGTTCTTGTTGAATGGGTGTGGAAGCTGAGAGAAGAAAGGAGGCTACTA 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GACGAGTACATGGTTCTTGTTGAATGGGTGTGGAAGCTGAGAGAAGAAAGGAGGCTACTA 1151
Query 841 GAATGTGTAGATACGGATCTAACCAAGTTCCCCGAAGACGAAGTGACCCGTTTCATCAAG 900
|| ||||||||| | || |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1152 GAGTGTGTAGATCCAGAACTAACCAAGTTCCCCGCAGATGAAGTGACCCGTTTCATCAAG 1211
Query 901 GTGGCTCTATTCTGCACTCAAGCCGCGGCGCAAAAGAGACCAAACATGAAGCAAGTGGTG 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1212 GTGGCTCTTTTCTGCACTCAAGCCGCGGCGCAAAAGAGACCAAACATGAAGCAAGTGATG 1271
Query 961 GAGATGCTTTGCAGGAAAGAGCTTAACCTCAACGAGGATGCCTTAACGGAACCTGGTGTC 1020
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1272 GAGATGCTTCGCAGGAAAGAGCTTAACCTCAACGAGGATGCCTTAACGGAACCTGGCGTC 1331
Query 1021 TACAGAGGTGTCAACAAGGGACGCAACCACCGTGGCATCGGTCTTAGAGG-CGGCCAAGG 1079
|||||||||||||||| |||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1332 TACAGAGGTGTCAACAGGGGACGCAACCACCGTGGAATCGGTCTTAG-GGTCGGCCAAGG 1390
Query 1080 CGGCAGCTCACAGGAGAGCTCGTCAACGCAACGTTACAAAGGGCAAAGCTCAGCCGTTCC 1139
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1391 AGGCAGCTCACAGGAGAGCTCGTCAACGCAACGTGACAAAGGGAAAAGCTCAGCCGTTCC 1450
Query 1140 ACAAGGGCCAACGTCCT-CGTCTAATATTTCCTTTCAGAGCATCACAGAGTTGGATCCTA 1198
|||||| | |||||| | |||||||||||||| ||||||||||||||||||| |||||
Sbjct 1451 TCAAGGGTCGACGTCCAAC-TCTAATATTTCCTTCCAGAGCATCACAGAGTTGGCTCCTA 1509
Query 1199 GATGATTTTTT-CTGTTGATAGAGCAC 1224
||||||||||| ||||| |||||||||
Sbjct 1510 GATGATTTTTTTCTGTTAATAGAGCAC 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5