BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928623
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09520.1 | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo... 2865 0.0
> AT3G09520.1 | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70
family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=1887
Length=1887
Score = 2865 bits (1551), Expect = 0.0
Identities = 1778/1890 (94%), Gaps = 6/1890 (0%)
Strand=Plus/Plus
Query 22 ATGATGACGAGAAAAGCAATGATAAACATTTGTTGCGTCGCGACAACGCCGTCGAAGCAT 81
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct 1 ATGATGACGAGAAAAGCAATGATAAACATTTGTTGCGTGGCCACAACGCCGTCCAAGTAT 60
Query 82 CCACCACCTCCTCCTCTTACGTTAACGCCTCGCCAGAGTTTGGAATCCGCGGCAATCTAT 141
||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 61 CCACCTCCTCCTCCTCTTACGTTAACCCCTCGCCAGAGTTTGGAATCGGCGGCTATCTAT 120
Query 142 GGAGTCATTGAATCCGCGGCGGATATAATCGAGAGATGGAACACTGAGACCAACACTTTC 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGTCATTGAATCCGCGGCGGATATAATCGAGAGATGGAACACTGAGACCAACACTTTC 180
Query 202 GCAAAAGTTACTTCTATGTTCTACGAGAACAAACAAGAAGCCATGGTGTTCATCGAACGA 261
|| |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 181 GCTAAAGTTACTTGTATGTTCTACGAGAACAAACCTGAAGCCATGATGTTCATCGAACGT 240
Query 262 GTGAAGGATCTTCAGAAGACTATGGACGTACTGGTGAGTGAAGATCCAAACTCGGAGAGG 321
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct 241 GTGAAGGATCTTCAGAAGACGATGGACGTACTCGTGAGTGAGGATCCAAACTCTGAGAGA 300
Query 322 CTCTTGAGAGCACATAAACTTATGCAGATCGCTATGAAGAGGTTACAAAAGGAGTTTTAC 381
||||||||| | ||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 301 CTCTTGAGATCGCATAAGCTTATGCAAATCGCTATGAAGAGGTTGCAAAAAGAGTTTTAC 360
Query 382 CAGATTCTTTCGATGAATCGTGCTTATCTTGATCCAGAATCAGTCTCTACTCGTTCTTCA 441
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 361 CAGATTCTTTCGATGAATCGTGCTTATCTTGATCCAGAATCAGTGTCCACTCGATCTTCA 420
Query 442 CTTACTTCAGCGAGATCTAGCTACTCCGATTTCCCCGAAGATGTTGAAGATCTAGATACA 501
|||||||| || |||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 421 CTTACTTCCGCAAGATCTAGCTACTCAGATTTCCCCGACTATGTCGAAGATCTAGATACG 480
Query 502 ATCATCGAACTGGAGGAGGTTTCTAGCAACGTCATGACGGATTTGAAATCCATCGCTGAG 561
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 ATCATCGAACTGGAGGAGGTTTCTACCAACGTCATGACGGATTTGAAATCCATCGCTGAG 540
Query 562 TGCATGATTGGTTCTGGTTATGCTAAGGAGTGTTTAAGCATATATAAAAGCATTA-GAAA 620
|||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| ||||
Sbjct 541 TGCATGATCGGTTCTGGTTACGCTAAGGAGTGTCTAAGCATCTATAAAAGCATTAGGAAA 600
Query 621 GTCGATAATCGACGAAGGGATCTATCGTTTAGAAGTCGAGAAGACGAGTACGGGGAAGGT 680
||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 601 -TCGATCATCGACGAAGGGATTTATCGTTTAGAAGTGGAGAAGACGAGTACTGGGAAGGT 659
Query 681 GAAGAAAATGTCATGGGAAGTTATGGAGTTGAAGATCAGAAGCTGGTTAAAAGCAGTCAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAAGAAAATGTCATGGGAAGTTATGGAGTTGAAGATCAGAAGCTGGTTAAAAGCAGTCAA 719
Query 741 AGTTTCCATGGAGACTCTTTTCAAAGGCGAGAAGATTTTGTGTGACCATGTCTTTGAATC 800
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 720 AGTTTCTATGGAGACTCTTTTCAAAGGTGAGAAGATTTTGTGTGATCATGTCTTTGAATC 779
Query 801 CTCTGATGCAATTAGAGAGTCTTGCTTTAGTGCTATCTCTCGTGATGGTGCGCTTCTTCT 860
|||||| ||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 780 CTCTGACGCAATTAGAGAGTCTTGCTTTAGTGATATCTCTCGAGACGGTGCGCTTCTTCT 839
Query 861 CTTTGGATTCCCAGAGATCATTGCTACCAAAACTAGCAAGAAAAACTCGCCGCCGGAGAA 920
|||||||||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||
Sbjct 840 CTTTGGATTCCCGGAGATCATTAATACTAAAACTAGCAAGAAACACTCTCCGCCGGAGAA 899
Query 921 AGTTTTCCGGCTGCTTGACATGTATACTGCCATCGCCGGAAACTGGCAAGCGATTGAATC 980
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 900 AGTTTTCCGGCTGCTTGACATGTACACCGCCATCGCCGGAAACTGGCAAGCGATTGAGTC 959
Query 981 TATCTTCTCGTTTGATTCGATCTCCGTCGTCAGATCTCTAGCACTTAAATCTCTAATCTC 1040
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 960 TATCTTCTCGTTTGATTCGATCTCCGTCGTCAGATCTCTTGCTCTTAAATCTCTAATCTC 1019
Query 1041 TCTCAGTGAATCGATTCGATCACTACTGGTGGAATTCGAATCCGGAATTCAGAACGATTC 1100
|||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 1020 TCTCAGCGAATCAATTCGATCACTACTTGTGGAATTCGAATCCGGAATCCAGAAGGACTC 1079
Query 1101 GTCGAAGGTGGTGGTTCCCGGCGGAGGAGTACATCCACTGACGATCTCCGTCATGGATCA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTCGAAGGTGGTGGTTCCCGGCGGAGGAGTACATCCACTGACGATCTCCGTCATGGATCA 1139
Query 1161 TCTCTCTCTCCTCGCTGACTACAGCAACGTACTCGTTGATATCCTCGCCGGGTCTCCACC 1220
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1140 CCTCTCTCTCCTCGCTGACTACAGCAACGTACTAGTCGATATCCTCGCCGGATCTCCACC 1199
Query 1221 ACCGGACAGATCGCTGCTACCGGAGTCTTACTTCAACGTCTCAGAATCCGACGACTCTCC 1280
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ACCGGACAGGTCGCTGTTACCGGAGTCTTACTTCAACGTCTCAGAATCCGACGACTCTCC 1259
Query 1281 TTCGTCGGAGCTGACGATCAGATTCGCTTGGCTCATCCTCGTCCTCCTTTGTAAAATCGA 1340
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 TTCGTCGGAGCTGACGATCCGTTTCGCTTGGATCATCCTCGTCCTCCTTTGTAAAATCGA 1319
Query 1341 TCGTAAATCAATTCACTACAAAGATTTCTCTGTACAGTATCTCTTCCTCACCAACAACCT 1400
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 1320 TCGTAAATCAATTCACTACAAAGACTTCTCTATACAGTATCTCTTCCTCACCAACAATCT 1379
Query 1401 CCAGCACGTGGTCTCACGTGCTCGTTCCTCAAACCTGAAGAACCTTCTCGGGGAGGATTG 1460
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 CCAGCACGTGGTCTCACGTGCTCGTTCCTCAAACCTGAAGAACCTTCTCGGCGAGGATTG 1439
Query 1461 GATCACGAGACATTTCGCTAAGATGAGACAATTCGCCGGGAGCTATAAGCGACTGGCTTG 1520
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1440 GATCACGAGACATTTCGCTAAGATGAGACAATTCGCCGGCAGCTATAAGCGGCTAGCTTG 1499
Query 1521 GGGACCGGTGGTTGCTACTTTACCTGAGAATCGTACGGTGGAGATGACGCCGGAAGAAGT 1580
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 GGGACCGGTGGTTGCTACTTTACCTGAGAATCGTACGGTGGAGATGACGCCGGAGGAAGT 1559
Query 1581 CAAGGAGCGGTTTGAAAAATTCAGCGAGAGCTTCGAAAACGCGTAC-GCTAAACACAGTG 1639
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1560 GAAGGAGCGGTTTGAAAAATTCAGCGAGAGCTTCGAAAACGCGTATAG-TAAGCACAGTG 1618
Query 1640 TCTGCGTCGTAGCTGATCCAAATCTACGAGACGAGATCAAAGTATCGATAGCGAGAAAGC 1699
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1619 TCTGCGTCGTAGCTGATCCAAATATACGAGACGAGATCAAAGTATCGATATCGAGAAAGC 1678
Query 1700 TGGTGCCGATTTATCGCGAGTTTTACAACACGAGAGGTTCTGTTATCTTGGCGGGA-GCC 1758
|||||||||| |||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 1679 TGGTGCCGATCTATCGCGAGTTTTACAACACGAGAGGTTCTGTTATCTTGG-GAGAAGGC 1737
Query 1759 GGTGGCGCCAGAAACTTGAGCTCAGTTGTCCGATTTACCCCTGAGGATATTGAAAACTAT 1818
| |||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1738 GATGGCGCGAGAAACCTGAACTCAGTTGTCCGATTTACCCCTGAAGATATTGAAAACTAT 1797
Query 1819 TTGTCTGATATGTTCACAGAGAAGGGTGGTTCGGGGAATTCATCTGCATCTTCTCCTTCC 1878
||||||||| |||||| |||||||||| ||||||||||||| || || ||||||||||||
Sbjct 1798 TTGTCTGATTTGTTCAGAGAGAAGGGTAGTTCGGGGAATTCGTCAGCCTCTTCTCCTTCC 1857
Query 1879 TCTTGTCGGTCTGGGCAATCCATGTCCTAA 1908
||||||||||| |||||||||||||||||
Sbjct 1858 TCTTGTCGGTCAAGGCAATCCATGTCCTAA 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95481436590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5