BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928651 Length=1020 Score E Sequences producing significant alignments: (Bits) Value AT3G09740.1 | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 |... 1690 0.0 > AT3G09740.1 | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 | chr3:2989431-2991661 FORWARD LENGTH=1292 Length=1292 Score = 1690 bits (915), Expect = 0.0 Identities = 986/1021 (97%), Gaps = 2/1021 (0%) Strand=Plus/Plus Query 1 ATTC-AAATTTCACAAAATAAAGTCTTCTTCCTCTTCGAATCAGAGATTTTCTCCTTCTT 59 |||| |||||||||||| ||||||||||||||||| ||||||||||||| |||||||| | Sbjct 84 ATTCAAAATTTCACAAATTAAAGTCTTCTTCCTCTCCGAATCAGAGATTGTCTCCTTC-T 142 Query 60 TAGCTCAGATCTGGGAGCTTCTGGTGATTGATTTGGAAGAAGATGACTGTGATCGATATT 119 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 143 TAGCTCAGATCTGGGAGCTTCTTGTGATAGATTTGGAAGAAGATGACTGTGATCGATATT 202 Query 120 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGG 262 Query 180 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 322 Query 240 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAATAGAGCTGCTGCT 299 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 323 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAACAGGGCTGCTGCT 382 Query 300 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCTCGATTGTCAGAGGAAGTTCCCAAG 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 383 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAG 442 Query 360 TTGCAGAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 419 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 TTGCAAAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 502 Query 420 AATGATTTAGTGCTCGCTCTACCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 479 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 503 AATGATTTGGTGCTCGCTCTTCCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 562 Query 480 GGCCCTAAAAACACTAGTGGTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 539 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 563 GGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 622 Query 540 TTTGATTCAGATGGGCGTTTTGATGATGATTACTTTCAAGAATCACATGAATCTAGCCAA 599 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 623 TTTGATTCAGATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAA 682 Query 600 TTCAGACAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCT 659 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 683 TTCAGGCAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCC 742 Query 660 GAAGGGTTAGATGCTTTGAAGAACATGGCGTCTGATATGAACGAGGAACTGGATAGACAA 719 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 743 GAAGGGTTAGATGCTTTGAAGAACATGGCTTCTGATATGAACGAGGAACTGGATAGACAA 802 Query 720 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCGGATCTTAAAAAC 779 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 803 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCCGATCTTAAGAAC 862 Query 780 ACCAATGTCAGACTTAAAGATACCGTGAACCAGCTGAGATCAAGCCGGAACTTCTGTATC 839 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 863 ACCAATGTTAGACTTAAAGATACCGTGAACCAGCTGAGATCTAGCCGGAACTTCTGTATC 922 Query 840 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 982 Query 900 TGATGAGATGAACACGACGAAAGGACCCAGTAGTACTTATCACCCGAGTCAGTGTCCAGT 959 | ||||||||||| | ||||||||||||| ||||||||||||||||||||| | |||||| Sbjct 983 TAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATCACCCGAGTCAATATCCAGT 1042 Query 960 GTGTGCTTGTGTCTTAATCTTCTACTCTGATATTTCTGCGAGAGTTTCTTCCTAATGTCA 1019 |||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||| Sbjct 1043 GTGTGCTTGTGTCTTACTCTTCTTCTCTGATATTTCTACGAGAGTTTCTTCTTAATGTCA 1102 Query 1020 A 1020 | Sbjct 1103 A 1103 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49982976265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5