BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928710
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10210.1 | Symbols: | SEC14 cytosolic factor family protein... 1177 0.0
> AT3G10210.1 | Symbols: | SEC14 cytosolic factor family protein
/ phosphoglyceride transfer family protein | chr3:3160237-3161614
REVERSE LENGTH=928
Length=928
Score = 1177 bits (637), Expect = 0.0
Identities = 717/756 (95%), Gaps = 4/756 (1%)
Strand=Plus/Plus
Query 1 GGAGGAGGAATATTCCGGCGATGGCGGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATC 60
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 16 GGAGGAGGAATATTCCGGTGATGGCTGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATC 75
Query 61 TAGGAATTGATGCTCGACCGTTCTTAACGAGAAGCGATGAGGTTGATGAACAAGAGAACT 120
|||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||| ||||
Sbjct 76 TAGGAATTGACGCTAGACCCTTCTTGACGAGAAGCGATGACGTTGATGAACAAGAAAACT 135
Query 121 GGCACGATTGTCCTCAATATC-TCGAAGATGAAGATTTCTCTGATCTCGATCTTCTCCAG 179
|||| |||||||| ||||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 136 GGCATGATTGTCCCCAATA-CTTAGGAGATGAAGATTTCTCTGATCTCGATCTTCTCCAG 194
Query 180 TTCTTCACACTCCAAGGCTTGGATAAGTCCGGTAACCGGATTTTCCGCGTCGTCGGAAAG 239
||||| || ||||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 195 TTCTTTACTCTCCAGGGCTTGGATAGGTCCGGTAACCGGATTTTCCGCATCGTCGGAAAG 254
Query 240 TATTTCCCTGCTCGTGTTGTGAGTGCAGAGCGGCTGAAGAAGTATATATTCCAGAAGATA 299
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 255 TATTTCCCTGCTCGTGTAGTGAGTGCGGAGCGGCTGAAGAAGTATATATCCCAGAAGATA 314
Query 300 AGCAACCAATGTCCTGAGGGACCCTTGTGCTTGGTTTACATGCATAGCACAGTGCAAAAG 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 315 AGCAACCAATGTCCTGAGGGACCTTTGTGCTTGGTTTACATGCATAGCACAGTCCAAAAG 374
Query 360 GACGAAAACTCACCGGGAATTACCATTTTACGGTGGATTTACGAGGACCTTCCTTCAGAT 419
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 375 GACGACAATTCACCGGGAATTACCATCTTACGGTGGATTTACGAGGACCTTCCTTCAGAT 434
Query 420 ATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCCAGACTTGTC 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 435 ATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCAAGACTTGTC 494
Query 480 ATTGCCACTCTTGGCCGTCTTCTTCTAAGTGGAGGACTGTACTGGAAGATTAAGTATGTG 539
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 495 ATTGCCACTCTTGGCCGCCTTCTTTTAAGTGGAGGACTGTACTGGAAGATTAAGTACGTG 554
Query 540 AGCAGGTTGCAGTATCTTTGGGAGGAAATAAAGAAAGGTGAGGTAGAAATTCCCGACTTT 599
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 555 AGCAGGTTGCAGTACCTTTGGGAGGACATAAAGAAAGGCGAGGTGGAAATTCCCGACTTT 614
Query 600 GTGAAGAACCACGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCG 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GTGAAGAACCATGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCG 674
Query 660 GATCCTTTCCAGTTA-GCAGAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAA 718
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GATCCTTTCCAGTTAAGC-GAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAA 733
Query 719 CAGATGGGTCTCATAGTACATTTGCTCTTTGTTGAG 754
|||||||||||||||||||| |||||||||||||||
Sbjct 734 CAGATGGGTCTCATAGTACAATTGCTCTTTGTTGAG 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5