BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928725
Length=3063
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10360.1 | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3210884-3... 5059 0.0
AT2G29190.1 | Symbols: APUM2, PUM2 | pumilio 2 | chr2:12543812-... 326 1e-87
AT2G29140.1 | Symbols: APUM3, PUM3 | pumilio 3 | chr2:12530838-... 287 5e-76
AT2G29200.1 | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12548931-... 265 2e-69
> AT3G10360.1 | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3210884-3215556
REVERSE LENGTH=3692
Length=3692
Score = 5059 bits (2739), Expect = 0.0
Identities = 2957/3064 (97%), Gaps = 8/3064 (0%)
Strand=Plus/Plus
Query 1 TTGATTCGGATGAAGGGAAGAGATGGTTACTGATAGCTACATGGATACGAGATCAAATTT 60
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 267 TTGATTCGGATGAAGGGAAGAGATGGTTACTAATAGCTACATGGATACGCGATCAAATTT 326
Query 61 GACAAGTGTGAATCGAGGATCCAATGTGGATCTCGAGGATCGATTCCAGAGGGAGCTCGA 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 327 GACAAGTGTGAATCGAGGATCCAATGTGGATCTCGAAGATCGATTCCAGAGGGAGCTCGA 386
Query 121 ATCTTTGCTCCAACAACATCGTAATCGGCAAACATTTGGCCGAGAGA-GAGAACGAGACA 179
|||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||
Sbjct 387 ATCTTTGCTCCAACAACATCGTAATCAGCAATCATTTGGCCGAGA-ACGAGAACGAGACA 445
Query 180 TTGATGTTCACAGAAGCGGAAGCGCGCCTCCTACGGTGGAAGGTTTGTTGAGGGCTATGG 239
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 446 TTGATGTTCACAGAAGCGGAAGCGCGCCTCCTACCGTGGAAGGATTGTTGAGAGCTATGG 505
Query 240 ATAATCAGTACTGGAACAATAATAACTCTGATCATAGAGATGTTGGGAATGTTAACAGTT 299
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 506 ATAATCAGTACTTGAACAATAACAACTCTGATCATAGAGATGTTGGGAATATTAGCAGTA 565
Query 300 TTAGCACTAGCAATGGCGTTGAGCTTTTGTCTGATGATGAGCTACGTTGGCACCCTGAGT 359
| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 566 TAACCACTAGCAATGGCGTTGAGCTTTTATCTGATGATGAGTTACGTTGGCACCCTGAGT 625
Query 360 ATCTCTCTTATTACTATTCGAATGAACATTCCAATCCGAGGTTGCCTCCTCCGTTGTTGT 419
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 626 ATCTCTCTTATTACTATTCGAATGAGCATTCGAATCCGAGGTTGCCTCCTCCGTTGTTGT 685
Query 420 CTAGAGAGGATTGGAGGGTTGCTCAGAGGTTTCACAACAGTGAGTCTGTGTTTGATCCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 CTAGAGAGGATTGGAGGGTTGCTCAGAGGTTTCACAACAGTGAGTCTGTGTTTGATCCTG 745
Query 480 TTGGGGAATGGAGGAAGAAAGCGGTTGAAGTCGACAACTCCTCATCGCTCTTCTCGGTTC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 746 TTGGGGAATGGAGGAAGAAAACGGTTGAAGTCGACAACTCCTCATCGCTCTTCTCGGTTC 805
Query 540 AGCCAGGGGTTCCAGTTGAGCAGGCAGAGAATGATTTGATGGAACTGAGGAATGCTGTAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AGCCAGGGGTTCCAGTTGAGCAGGCAGAGAATGATTTGATGGAACTGAGGAATGCTGTAG 865
Query 600 CTCAGGGCCGCTCTCAGAAGGTGCAGCGGCTAGATCAAGGCAGAGAAGATTTTATTGGAT 659
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 866 CTCAGGGCCGCTCTCAGAAGGTGCAGCGGCTAGATCAAGGCAGAGAAGACTTGATTGGAT 925
Query 660 TATCTGGATATCCTGGGCTTGGACCGAGAAGGAAGAGTTTCGCCGATATACTTCAGGAAG 719
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 926 TATCTGGATATTCTGGGCTTGGACCGAGAAGGAAGAGTTTTGCTGATATACTTCAGGAAG 985
Query 720 GACTTGAACGGGATGCAACCTTAGGCAGCCAACTCTCTCGGCCTGCAAGCTGCAACACTT 779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GACTTGAACGGGATGCAGCCTTAGGCAGCCAACTCTCTCGGCCTGCAAGCTGCAACACTT 1045
Query 780 TTCGGGACATGAAAGATTCTGCTGTTTTATCGAATTTCAGTGCTGGTGGATTCGACAGCC 839
||||||| ||||||||| ||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1046 TTCGGGATATGAAAGATGCTGCTGTTTTATCAAATTTCAGTGCCGGTGGATTTGACAGCC 1105
Query 840 CATTAGCATTCCATGAATCATTACATGCTACTGCCAAAAACAGTCCAAATACTATGCTTG 899
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1106 CATTAGCATTCCATGATTCATTACATTCTACTGCCAAAAACAGTCCAAATACTATGCTTG 1165
Query 900 GCTCCACCACGAGTTCCCCAGTGCCAAGAAATAGAACTCCTGACTCACATCTAGTAGGGC 959
| ||||||| |||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1166 GATCCACCATGAGTTCTCCGGTGCCAAGAAATAGAACTCCTGACTCACATCTAGTAGGAC 1225
Query 960 GATCTCCGGCCTCTGGCCTTCCCCCTATTGGTACCAGGGTCGGTCCTGTCGAGAAAAAGA 1019
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1226 GATCTACGGCCTCTGGCCTTCCCCCTATTGGTACCAGGGTTGGTCCTGTCGAGAAGAAGA 1285
Query 1020 ATACTTTTGGCACAGCCATCCAAAACTCTGAATCTTACACTGCTGCCGATGTTGCCGACA 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1286 ATACTTTTGGCACAGCCATCCAAAACTGTGAATCTTACACTGCTGCCGATGTTGCCGACA 1345
Query 1080 CATTGTCGAGGTTGAACATGTCAGAGATGAGTCAAGTAAAAGAAAACCATATGCAGTCAC 1139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CATTGTCCAGGTTGAACATGTCAGAGATGAGTCAAGTAAAAGAAAACCATATGCAGTCAC 1405
Query 1140 AGCTTCAAGTGGAATTGGAGAATCAATCTGATGTCATGCGTTACATACCCAATGGTCATA 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AGCTTCAAGTGGAACTGGAGAATCAATCTGATGTCATGCGTTACATACCCAATGGTCATA 1465
Query 1200 AGAAGGCTTTGCGGCAACAAGATATTGCTATGGCAGAATCAAAAGATCACTTGTTTTCTG 1259
|||||||||||||||||||| ||| | ||||||| | |||||||||||||||||||
Sbjct 1466 AGAAGGCTTTGCGGCAACAAAATA---C---GGCAGAAACTAAAGATCACTTGTTTTCTG 1519
Query 1260 CAAATTATGGTGGAATGAGTGGGTATGGAACAAGTCTTGGAGCTTCTACAGTGGGTTCCC 1319
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1520 CAAATTATGGTGGAATGAGTGGGTATGGAGCAAGTCTTGGTGCTTCTACAGTGGGTTCCC 1579
Query 1320 ATGGACAGGTCAACATCCCTAAACGAACCTCCTCTTCAGCGAGTCTTTACTCAACTTCAG 1379
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1580 ATGGACAGGTCAACATCCCTAAACGAACCTCCTCTTCAGCGAGTCTCTACTCAACTTCAG 1639
Query 1380 AACATTCTAGATTAGGAAGCCTGGGCTTATCTGATGTCAATATTCGGAATGCAAATATTA 1439
| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 1640 ACCATTCTAGATTAGGAAGCGTGGGCTTATCTGATGTCAATATTAGGAATGGAAATATTA 1699
Query 1440 ATGGAACAGACTTCTCCACAGCTGGTGGTTATTTGGCAAAGAACAAGTTGAATTCATTAG 1499
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1700 ATGGAACAGACTTCTCCACAGCTGGTGGTTATATGGCAAAGAACAAGTTGAATTCATTAG 1759
Query 1500 CTGAGCACTATTCCGCTGAAGGCTCACATTTGTCTGGGGAAGGGGATAGACAAAGCTTGA 1559
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1760 CTGAGCACTATTCCGCTGAAGGCTCACATTTGACTGGGGATGGGGATAGACAAAGCTTGA 1819
Query 1560 ACAGATTGATAAATCAAGTTGCTTCTGAGCTTCACTCTCCAGTTATGGACCCACATTACA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 ACAGATTGATAAATCAAGTTGCTTCTGAGCTTCACTCTCCAGTTATGGACCCACATTACA 1879
Query 1620 GCCAGTATCTGCATACGGCATCTTCTACTGCTGCACCAACCGATCATTCTCTTATGAGAA 1679
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 1880 GCCAGTATCTGCATACGGCATCTTCTACTGCTGCCCCAATCGATCATTCTCTTATTAGAA 1939
Query 1680 ACAATTTTGGGACTTCAAACGGAGATACGGCTAATGAATACCTTGCGATGTTACTTGCTC 1739
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1940 ACAATTTCGGGACTTCAAACGGAGATACGGCTAACGAATACCTCGCGATGTTACTTGCTC 1999
Query 1740 AAAACAGGCAACAGCTGGGTAACCTCAGTGCTGCAAATTCTAGATTTTTTGAGAGTCCTT 1799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2000 AAAACAGGCAACAGCTGGGTAACCTCAATGCTGCAAATTCTAGATTTTTTGAGAGTCCTT 2059
Query 1800 CATATGATCTTGGCAACATTTATCTAGGAAACCATTTGCCTTCTCCTTCCAAGAATGCAA 1859
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2060 CATATGATCTTGGCAACATGTATCTAGGAAACCATTTGCCTTCTCCTTCCAAGAATTCAA 2119
Query 1860 GAAATTTCCAGAACATGCGTATGTCACAATCTGCCTCAATGATGAAAGTTCCATTCGGAG 1919
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2120 GAAATTTCCAGAACATGCGTATGTCACAATCTGCCTCAATGATGAAAGTTCCTTTCGGAG 2179
Query 1920 GCTTACAGGGATCATCCCATGTAGATATTGGCAGCACGGCAGACGCATCCTTACTAGAGG 1979
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2180 GCTTACAGGGATCATCCCATGTAGATATTGGCAGTACGGCAGAAGCATCCTTACTAGAGG 2239
Query 1980 GGTTTAAGAACAACAAGACAAGGTCTTTGGAGCTTTCAGAAATAGTTGGTCATGTGATTG 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 GGTTTAAGAACAACAAGACAAGGTCTTTGGAGCTTTCAGAAATAGTTGGTCATGTGATTG 2299
Query 2040 AGTTCAGCATGGATCAGTACGGAAGTCGTTTCATTCAGCAGAAACTTGAGACTGCAACGG 2099
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2300 AGTTCAGCATGGATCAGTACGGAAGTCGTTTCATTCAACAGAAACTTGAGACTGCAACGG 2359
Query 2100 ATGAGGAAAAGAATGCTATATTCCCTGAGATACTTCCTTACGGCCGCACTTTAATGACAG 2159
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2360 ATGAGGAAAAGAATGCAATATTCCCTGAGATACTTCCTTACGGCCGTACTTTAATGACAG 2419
Query 2160 ATGTCTTTGGAAATTATGTTATTCAAAAGTTTTTTGAGCATGGTACAAACAAGCAGAGAA 2219
||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 2420 ATGTCTTTGGAAATTATGTCATTCAAAAGTTTTTTGAACATGGTACAACCAAGCAGAGAA 2479
Query 2220 AAGAACTCGCTGAACAAGTAACAGGCCATGTTTTGGCTCTTTCTCTACAAATGTATGGCT 2279
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2480 AAGAACTCGCTGAACAAGTAACAGGCCACGTTTTGGCTCTTTCTCTACAAATGTACGGCT 2539
Query 2280 GCAGGGTTATCCAAAAGGCGTTAGAGGTGGTTGAATTGGAGCAGCAAGCTCGAATGGTGC 2339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2540 GCAGGGTTATCCAAAAGGCGTTAGAGGTGGTTGAATTGGAGCAGCAAGCTCGAATGGTGA 2599
Query 2340 AAGAGCTTGATGGGTCTGTCATGAAATGCGTTCATGACCAGAACGGTAATCATGTGATCC 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2600 AAGAGCTTGATGGGTCTGTCATGAAATGCGTTCATGACCAGAACGGTAATCATGTGATCC 2659
Query 2400 AGAAGTGTATAGAGCGTCTTCCTCAGGATTGGATACAGTTCATCATTTCTTCATTCTACG 2459
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2660 AGAAGTGTATAGAGCGTCTTCCTCAGGATTGGATACAGTTCATCATTTCCTCATTCTACG 2719
Query 2460 GAAAAGTTTTAGCTCTTTCAACACACCCTTATGGATGCCGTGTAATCCAGAGGGTACTGG 2519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2720 GAAAAGTTTTAGCTCTTTCAACACACCCTTATGGATGCCGTGTAATCCAGAGGGTACTGG 2779
Query 2520 AGCATATTGATGACATAGAAACCCAACGGATCATTATGGAGGAAATCATGGATTCAGTCT 2579
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2780 AGCATATTGATGATATAGAAACCCAACGGATCATTATGGAGGAAATCATGGATTCAGTCT 2839
Query 2580 GTACTCTAGCACAAGATCAGTACGGTAATTATGTTATTCAGCATATCATACAACACGGTA 2639
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 2840 GTACTCTAGCACAAGATCAATACGGAAATTATGTTATCCAGCATATCATACAACATGGTA 2899
Query 2640 AACCTCATGAACGGTCAGAAATTATCAATAAGCTTGCTGGACAGATTGTGAAGATGAGTC 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2900 AACCTCATGAACGGTCAGAAATTATCAATAAGCTTGCTGGACAGATTGTGAAGATGAGTC 2959
Query 2700 AGCAAAAGTTTGCTTCTAATGTTGTTGAAAAGTGCTTAACATTTGGCGGTCCAGAGGAAC 2759
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2960 AGCAAAAGTTTGCTTCTAATGTTGTTGAAAAGTGCCTAACATTTGGCGGTCCAGAGGAAC 3019
Query 2760 GCCAGGTACTAGTGAATGAGATGCTTGGTTATACTGATGAGAACGAGCCTCTTCAGGCGA 2819
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3020 GTCAGGTTCTAGTGAATGAGATGCTTGGTTATACTGATGAAAACGAGCCTCTTCAGGCGA 3079
Query 2820 TGATGAAGGACCCATTTGGGAACTACGTAGTGCAGAAGGTTCTTGAAACATGCGATGATC 2879
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 3080 TGATGAAGGACCCATTTGGGAACTATGTAGTGCAGAAGGTTCTTGAAACATGTGATGATC 3139
Query 2880 AAAGTCTTGCACTCATTCTTTCTCGCATCAAAGTACATTTGAATGCCTTGAAGAGATACA 2939
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3140 AAAGTCTTGCACTCATTCTTTCTCGCATCAAAGTACACTTGAATGCCTTGAAGAGATACA 3199
Query 2940 CATATGGGAAACATATCGTTGCCCGGGTTGAGAAACTTATCACTACCGGAGAGAGAAGAA 2999
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 3200 CATATGGGAAACACATCGTTGCCCGGGTTGAGAAGCTTATCACTACTGGAGAGAGAAGAA 3259
Query 3000 TCGGGCTCTCGTCATCTCTTGCCGCAAACGCTACTCCTTAACCATCTCTGAGTAAGTAAA 3059
|||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||
Sbjct 3260 TCGGACTCTCGTCATCTCTTGCCGCGAACACCACTCCATAACCATCTCTGAGTAAGTAAA 3319
Query 3060 ACCT 3063
||||
Sbjct 3320 ACCT 3323
> AT2G29190.1 | Symbols: APUM2, PUM2 | pumilio 2 | chr2:12543812-12548494
REVERSE LENGTH=3703
Length=3703
Score = 326 bits (176), Expect = 1e-87
Identities = 740/1001 (74%), Gaps = 84/1001 (8%)
Strand=Plus/Plus
Query 2018 GAAATAGTTGGTCATG-TGATTGAGTTCAGCAT-GGATCAGTACGGAAGTC-GTTTCATT 2074
||||||| ||| |||| || | |||||||| | ||||||||| ||||| | |||| |||
Sbjct 2236 GAAATAGCTGGCCATGTTG-TAGAGTTCAG-TTCGGATCAGTATGGAAGCCGGTTT-ATT 2292
Query 2075 CAGCAGAAACTTGAGACTGCAAC--G-GATGAGGAAAAGA-ATGCTATATTCCCTGAGAT 2130
||||||||||| ||||| ||||| | ||||| ||||| | ||| | || | |||||
Sbjct 2293 CAGCAGAAACTCGAGACAGCAACAAGTGATGA-GAAAA-ACATGGTTTA-T-GAGGAGAT 2348
Query 2131 AC-TTCCTTACGGC-C--GCACTTTAATGACAGATGTCTTTGGAAATTATGTTATTCAAA 2186
| | || || || | || | | ||||| || || |||||||| ||||| ||||| |
Sbjct 2349 -CATGCCACAC-GCTCTTGC-C-CTGATGACTGACGTTTTTGGAAACTATGTGATTCAGA 2404
Query 2187 AGTTTTTTGAGCATGGTA--CAAACAAGCAGAGAAAAGAACTCGCTGA-ACAAGTAACAG 2243
|||| ||||||||||| | | || | ||||||| |||| | || || | || | |
Sbjct 2405 AGTTCTTTGAGCATGG-ACTCCCACCA-CAGAGAAGAGAATTGGCAGATA-AACTCTTTG 2461
Query 2244 GCCATGTTTTGGCTCTT-TCTCTACAAATGTATGGCTG-CAGGGTTATCCAAAAGGC-GT 2300
| |||||||| ||||| | ||||| |||||||| || | | ||||| || ||||| |
Sbjct 2462 ACAATGTTTTGCCTCTTAGC-CTACAGATGTATGGTTGTC-GTGTTATTCAGAAGGCAAT 2519
Query 2301 TAGAGGTGGTTGAAT-TGGAGCAGCAAGCTCGAATGGTGCAAGAGCTTGATGGGTC-TGT 2358
| |||||||||| || | || ||| || | ||||||| |||| || ||| || | |||
Sbjct 2520 T-GAGGTGGTTG-ATCTAGACCAGAAAATTAAAATGGTGAAAGAACTCGAT-GGACATGT 2576
Query 2359 CATGAAATGCGTTCATGACCAGAACGGTAATCATGTGATCCAGAAGTGTATAGAGCGTCT 2418
||| |||||| | ||| ||||| || || |||||| | || |||||||| || || |
Sbjct 2577 GATGCGATGCGTACGTGATCAGAATGGGAACCATGTGGTTCAAAAGTGTATTGAATGTGT 2636
Query 2419 TCCTCAGGATTGGATAC-AGTTCATCATTTCTTCATTCTACGGAAAAGTT-TTAGCTCTT 2476
||| | || || | | || || ||||| | |||| || || ||| | | | ||
Sbjct 2637 GCCTGAAGAAAACAT-CGAATTTATTATTTCCACCTTCTTTGGCAATGTTGTGA-CCCTC 2694
Query 2477 TCAACACACCCTTATGGATGCCGTGTAATCCAGAGGGTACTGGAGCATATTG--ATGA-C 2533
|| || ||||| ||||| ||||| || || ||||||||| |||||| | || |||| |
Sbjct 2695 TCCACTCACCCATATGGGTGCCGAGTTATTCAGAGGGTATTGGAGC--ACTGCCATGACC 2752
Query 2534 ATAGAAACCCA-ACGGATCATTATGGAGGAAATCATGGATTC-AGT-CT-GTACT-CTAG 2588
| || || || | | | ||||||| |||||||| | || | | | ||| | || |
Sbjct 2753 CT-GATACTCAGA-GTAAGGTTATGGATGAAATCAT-G--TCAACTATTAGTA-TGCTGG 2806
Query 2589 CACAAGATCAGTACGGTAATTATGTTATTCAGCATATCA-TACAACACGGTAAA-CCTCA 2646
| ||||||||||| || || ||||||||||||||| | | | ||||||| ||| ||| |
Sbjct 2807 CCCAAGATCAGTATGGAAACTATGTTATTCAGCATGT-ATTGGAACACGG-AAAGCCTGA 2864
Query 2647 TGAACGGT-CAGAAATTATCAA-TAAGCTT-GC-TGGACAGATTGTGAAGATGAGTCAGC 2702
||| | || | | |||||||| || || || ||| ||||||| ||||||| || |
Sbjct 2865 TGAGC-GTACTGTGATTATCAAGGAA--TTAGCGGGGA-AGATTGTTCAGATGAGCCAAC 2920
Query 2703 AAAAGTTTGCTTCTAATGTTGTTGA-AAAGTGCTTAACATTTGGCGGTCCAGAGGAACGC 2761
| ||||||||||| || |||||||| ||| || || || ||||| || |||||||||||
Sbjct 2921 AGAAGTTTGCTTCAAACGTTGTTGAGAAA-TGTTTGACTTTTGGAGGGCCAGAGGAACGG 2979
Query 2762 CAGGTACTAGTGAATGAGATGCTTGGTTA-TACTGATGAGAACGAGCCTCTTCAGGCGAT 2820
| | || || |||||||||| ||| | |||||||| ||||||||||||||||||||
Sbjct 2980 GAATTTCTGGTAAATGAGATGC-TGGGCACAACTGATGAAAACGAGCCTCTTCAGGCGAT 3038
Query 2821 GATGAAGGACCCA-TTTGGGAACTACGTAGTGCAGAAGGTTCTT-GAAACATGCGATGAT 2878
||||||||| | | |||| ||||| |||||||| || ||| || || ||||| |||||
Sbjct 3039 GATGAAGGATC-AGTTTGCCAACTATGTAGTGCAAAAAGTT-TTAGAGACATGTGATGAC 3096
Query 2879 CAA-AGTCTTGCA-CTCATTCTTTCTCGCATCAAAGTACATTTGAATGCCTTGAAGAGAT 2936
||| || | || | || || ||| ||| || ||||| ||| | ||||| || |||| ||
Sbjct 3097 CAACAG-CGTG-AGCTGATCCTTGGTCGTATTAAAGTGCATCTCAATGCTTTAAAGAAAT 3154
Query 2937 ACACATATGGGAAA-CATATCGTTGCCCGGGTTGAGAAACT 2976
|||| ||||| ||| ||||||||||| || ||||| |||||
Sbjct 3155 ACACTTATGG-AAAGCATATCGTTGCTCGTGTTGAAAAACT 3194
> AT2G29140.1 | Symbols: APUM3, PUM3 | pumilio 3 | chr2:12530838-12535399
FORWARD LENGTH=3324
Length=3324
Score = 287 bits (155), Expect = 5e-76
Identities = 752/1030 (73%), Gaps = 82/1030 (8%)
Strand=Plus/Plus
Query 2012 CTTTCAGAAATAGTTGGTCATG-TGATTGAGTTCAGCAT-GGATCAGTACGGAAGTC-GT 2068
||||| ||||||| ||| |||| || | |||||||| | ||||||||| ||||| | ||
Sbjct 1960 CTTTCTGAAATAGCTGGCCATGTTG-TAGAGTTCAG-TTCGGATCAGTATGGAAGCCGGT 2017
Query 2069 TTCATTCAGCAGAAACTTGAGACTG---CAACGGATGAGGAAAAGA-ATGCTATATTCCC 2124
|| |||||||||||||| ||||| | |||| ||||| ||||| | ||| | || |
Sbjct 2018 TT-ATTCAGCAGAAACTCGAGACAGCAACAACTGATGA-GAAAA-ACATGGTTTA-T-GA 2072
Query 2125 TGAGATAC-TTCCTTACGGC-C--GCACTTTAATGACAGATGTCTTTGGAAATTATGTTA 2180
||||| | | || | || | || | | ||||| || || |||||||| ||||| |
Sbjct 2073 GGAGAT-CATGCC-AAAAGCTCTTGC-C-CTGATGACTGACGTTTTTGGAAACTATGTGA 2128
Query 2181 TTCAAAAGTTTTTTGAGCATGGTA--CAAACAAGCAGAGAAAAGAACTCGCTGA-ACAAG 2237
|||| ||||| ||||||||||| | | || | ||||||| |||| | | || | ||
Sbjct 2129 TTCAGAAGTTCTTTGAGCATGG-ACTCCCACCA-CAGAGAAGAGAATTGGGAGAGA-AAC 2185
Query 2238 TAACAGGCCATGTTTTGGCTCTT-TCTCTACAAATGTATGGCTG-CAGGGTTATCCAAAA 2295
| | | | |||||||| ||||| || |||| |||||||| || | | || ||||| ||
Sbjct 2186 TCATTGACAATGTTTTGCCTCTTAGCT-TACAGATGTATGGTTGTC-GTGTCATCCAGAA 2243
Query 2296 GGC-GTTAGAGGTGGTTGAAT-TGGAGCAGCAAGCT-CGAATGGTGC-AAGAGCTTGATG 2351
||| || |||||||||| || | || ||| || | | |||||| | |||| ||||||
Sbjct 2244 GGCAATT-GAGGTGGTTG-ATCTAGACCAG-AAAATCCAAATGGT-CAAAGAACTTGAT- 2298
Query 2352 GGTC-TGTCATGAAATGCGTTCATGACCAGAACGGTAATCATGTGATCCAGAAGTGTATA 2410
|| | ||| ||| ||| || | ||| ||||| || || |||||| | || ||||||||
Sbjct 2299 GGACATGTGATGCGATGTGTACGTGATCAGAATGGGAACCATGTGGTTCAAAAGTGTATT 2358
Query 2411 GAGCGTCTTCCTCAGGATTGGATACAGTTCATCATTTCTTCATTCTACGGAAAAGT-TTT 2469
|| || | ||| | || || |||| || ||||| | |||| || | || |
Sbjct 2359 GAATGTGTGCCTGAAGAAAACATTGAGTTTATTATTTCAACTTTCTTTGGCCATGTGGTG 2418
Query 2470 AGCTCTTTCAACACACCCTTATGGATGCCGTGTAATCCAGAGGGTACTGGAGCATATTG- 2528
| | || || || ||||| || || |||||||| || ||||| ||| |||| | | ||
Sbjct 2419 A-CCCTCTCCACTCACCCATACGGGTGCCGTGTTATTCAGAGAGTATTGGA--ACACTGC 2475
Query 2529 -ATGA-CATAGAAACCCA-ACGGATCATTATGGAGGAAATCATGGATTCA--GTCT-GTA 2582
|| | | | || || || | | | ||||||| |||||| | | | || || | |||
Sbjct 2476 CATAACCCT-GATACACAGA-GTAAGGTTATGGAAGAAATCCT-G-TCCACTGT-TAGTA 2530
Query 2583 CT-CTAG-CACAAGATCAGTACGGTAATTATGTTATTCAGCATATCA-TACAACACGGTA 2639
| || | | ||||||||||| || || |||||| |||||||| | | | | || || |
Sbjct 2531 -TGCT-GACCCAAGATCAGTATGGAAACTATGTTGTTCAGCATGT-ACTGGAGCATGG-A 2586
Query 2640 AA-CCTCATGAACGGTCAGAAATTATCAATA-AGCTT-GC-TGGACAGATTGTGAAGATG 2695
|| ||| |||| || | | || ||||| | || || || ||| ||||||| |||||
Sbjct 2587 AAGCCTGATGAGCGCACTGTGATAATCAA-AGAG-TTAGCGGGGA-AGATTGTTCAGATG 2643
Query 2696 AGTCAGCAAAAGTTTGCTTCTAATGTTGTTGAAAAGTGCTTAACATTTGGCGGTCCAGAG 2755
|| || || |||||||| || || |||||||| ||||| || || ||||| ||||| |||
Sbjct 2644 AGCCAACAGAAGTTTGCATCAAACGTTGTTGAGAAGTGTTTGACTTTTGGAGGTCCTGAG 2703
Query 2756 GAACGCCAGGTACTAGTGAATGAGATGCTTGGTTA-TACTGATGAGAACGAGCCTCTTCA 2814
||||| | | || ||||||||||||| ||| | |||||||| ||||||||||||||
Sbjct 2704 GAACGGGAATTGCTGGTGAATGAGATGC-TGGGCACAACTGATGAAAACGAGCCTCTTCA 2762
Query 2815 GGCGATGATGAAGGACCCA-TTTGGGAACTACGTAGTGCAGAAGGTTCTTGAAACATGCG 2873
||||||||||||||| | | |||| ||||| |||||||| || || || || ||||| |
Sbjct 2763 GGCGATGATGAAGGATC-AGTTTGCAAACTATGTAGTGCAAAAAGTCCTGGAGACATGTG 2821
Query 2874 ATGATCAA-AGTCTTGCACTCATTCTTTCTCGCATCAAAGTACATTTGAATGC-CTTGAA 2931
|||| ||| || | || ||| || || |||| || ||||| ||| ||||||| || ||
Sbjct 2822 ATGACCAACAG-CGTGAACTGATACTGACTCGTATTAAAGTGCATCTGAATGCTCTA-AA 2879
Query 2932 GAGATACACATATGGGAAA-CATATCGTTGCCCGGGTTGAGAAACTTATCACTACCGGAG 2990
|| |||||| || || ||| |||||||||||||| ||||| ||||| | || | ||||
Sbjct 2880 GAAATACACTTACGG-AAAGCATATCGTTGCCCGTGTTGAAAAACTCGTTGCTGCTGGAG 2938
Query 2991 AGAGAAGAAT 3000
|||| |||||
Sbjct 2939 AGAGGAGAAT 2948
> AT2G29200.1 | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12548931-12553433
REVERSE LENGTH=3622
Length=3622
Score = 265 bits (143), Expect = 2e-69
Identities = 765/1054 (73%), Gaps = 88/1054 (8%)
Strand=Plus/Plus
Query 1991 AACAAGACAAG-GTCTTTGGAGCTTTCAGAAATAGTTGGTCATG-TGATTGAGTTCAGCA 2048
||||| ||||| | ||| || ||||| ||||||| ||| |||| || | ||||||||
Sbjct 2024 AACAAAACAAGAGGATTT-GAACTTTCTGAAATAGCTGGCCATGTTG-TGGAGTTCAG-T 2080
Query 2049 T-GGATCAGTACGGAAGTCG-TTTCATTCAGCAGAAACTTGAGACTG---CAACGGATGA 2103
| |||||| || ||||| || ||| |||||||||||||| ||||| | |||| |||||
Sbjct 2081 TCGGATCAATATGGAAGCCGCTTT-ATTCAGCAGAAACTCGAGACAGCAACAACTGATGA 2139
Query 2104 GGAAAAGA-ATGCTATATTCCCTGAGATAC-TTCCTTACGGCCGCAC-T-T--TAATGAC 2157
||||| | ||| | || | ||||| | | || || || | | | | |||||
Sbjct 2140 -GAAAA-ACATGGTCTA-T-GAGGAGAT-CATGCC--AC--AAGCTCTTGTCCTGATGAC 2190
Query 2158 AGATGTCTTTGGAAATTATGTTATTCAAAAGTTTTTTGAGCATGGTA--CAAACAAGCAG 2215
|| || |||||||| ||||| ||||| ||||| ||||||||||| | | | | |||
Sbjct 2191 TGACGTTTTTGGAAACTATGTGATTCAGAAGTTCTTTGAGCATGG-ACTCCCGCCA-CAG 2248
Query 2216 AGAAAAGAACTCGCTGA-ACAAGTAACAGGCCATGTTTTGGCTCTT-TCTCTACAAATGT 2273
|| | |||| | || || | || | | |||||||||| ||||| || |||| ||||
Sbjct 2249 AGGAGAGAATTGGCAGAGA-AACTCTTTGACCATGTTTTGCCTCTTAGCT-TACAGATGT 2306
Query 2274 ATGGCTGCAGGGTTATCCAAAAGGC-GTTAGAGGTGGTTGAAT-TGGAGCAGCAAGCTCG 2331
|||| ||| | || ||||| ||||| || |||||||||| || | || ||| || |
Sbjct 2307 ATGGTTGCCGTGTCATCCAGAAGGCAATT-GAGGTGGTTG-ATCTAGACCAGAAAATTAA 2364
Query 2332 AATGGTGCAAGAGCTTGATGGGTC-TGTCATGAAATGCGTTCATGACCAGAACGGTAATC 2390
||||||| |||| |||||| || | ||| ||| ||| || | ||| ||||| || || |
Sbjct 2365 AATGGTGAAAGAACTTGAT-GGACATGTAATGCGATGTGTACGTGATCAGAATGGGAACC 2423
Query 2391 ATGTGATCCAGAAGTGTATAGAGCGTCTTCCTCAGGATTGGATAC-AGTTCATCATTTCT 2449
||||| | || |||||||| || || | ||| | || || | |||| || |||||
Sbjct 2424 ATGTGGTTCAAAAGTGTATTGAATGTGTGCCTGAAGAAAACAT-CGAGTTTATTATTTCA 2482
Query 2450 TCATTCTACGGAAAAGT-TTTAGCTCTTTCAACACACCCTTATGGATGCCGTGTAATCCA 2508
| |||| || | || | | | || || || ||||| ||||| |||||||| || ||
Sbjct 2483 ACTTTCTTTGGCCATGTGGTGA-CCCTCTCCACTCACCCATATGGGTGCCGTGTTATTCA 2541
Query 2509 GAGGGTACTGGAGCATATTG--ATGA-CATAGAAACCCA-ACGGATCATTATGGAGGAAA 2564
||| ||| |||| | | || |||| | | || || || | | | ||||||| ||||
Sbjct 2542 GAGAGTATTGGA--ACACTGCCATGACCCT-GATACACAGA-GTAAGGTTATGGAAGAAA 2597
Query 2565 TCATGGATTCA--GTCT-GTACT-CTAGCACAAGATCAGTACGGTAATTATGTTATTCAG 2620
|| | | | || || | ||| | || || ||||||||||| || || |||||| |||||
Sbjct 2598 TCCT-G-TCCACTGT-TAGTA-TGCTGGCCCAAGATCAGTATGGAAACTATGTTGTTCAG 2653
Query 2621 CATAT-CATACAACACGGTAAA-CCTCATGAACGGTCAGAAATTATCAATAAG-CTT-GC 2676
||| | | | | || || ||| ||| |||| || | | || ||| | ||| || ||
Sbjct 2654 CATGTGC-TGGAGCATGG-AAAGCCTGATGAGCGCACTGTGATAATC-A-AAGAATTGGC 2709
Query 2677 -TGGACAGATTGTGAAGATGAGTCAGCAAAAGTTTGCTTCTAATGTTGTTGA-AAAGTGC 2734
||| ||||||| ||||||| ||||| ||||| || || || |||||||| ||| ||
Sbjct 2710 GGGGA-AGATTGTTCAGATGAGCCAGCAGAAGTTCGCATCAAACGTTGTTGAGAAA-TGT 2767
Query 2735 TTAACATTTGGCGGTCCAGAGGAACGCCAGGTACTAGTGAATGAGATGCTTGGTTA-TAC 2793
|| || ||||| ||||| |||||||| | | || ||||||||||||| ||| | ||
Sbjct 2768 TTGACTTTTGGAGGTCCTGAGGAACGAGAATTGCTTGTGAATGAGATGC-TGGGAACAAC 2826
Query 2794 TGATGAGAACGAGCCTCTTCAGGCGATGATGAAGGACCCATTTGGGAA-CTACGTAGTGC 2852
|||||| ||||||||||||||||||||||||||||| | | || | || ||| |||||||
Sbjct 2827 TGATGAAAACGAGCCTCTTCAGGCGATGATGAAGGATC-AGTTCGCAAACTATGTAGTGC 2885
Query 2853 AGAAGGTTCTTGAA-ACATGCGATGATCAA-AGTCTTGCA-CTCATTCTTTCTCGCATCA 2909
|||| ||| ||| | || || ||||| ||| | | || | || || ||| |||||||||
Sbjct 2886 AGAAAGTT-TTGGAGACCTGTGATGACCAACAA-CGTG-AGCTGATACTTACTCGCATCA 2942
Query 2910 AAGTACAT-TTGAATGCCTTGAAGA-GATACACATATGGGAAA-CATATCGTTGCCCGGG 2966
|||| ||| || | ||| || || | | ||||| ||||| ||| ||| ||||||| ||
Sbjct 2943 AAGTGCATCTT-ACTGCTTTAAAAAAG-TACACTTATGG-AAAGCATGTCGTTGCGCGTA 2999
Query 2967 TTGAGAAACTTATCACTACCGGAGAGAGAAGAAT 3000
|||| ||||| | || | |||||||| |||||
Sbjct 3000 TTGAAAAACTCGTTGCTGCTGGAGAGAGGAGAAT 3033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152306838948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5