BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928734
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10420.2 | Symbols: SPD1 | P-loop containing nucleoside trip... 3400 0.0
> AT3G10420.2 | Symbols: SPD1 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:3239180-3242537
FORWARD LENGTH=2445
Length=2445
Score = 3400 bits (1841), Expect = 0.0
Identities = 2021/2107 (96%), Gaps = 15/2107 (1%)
Strand=Plus/Plus
Query 3 AAATAATTAATT-ATCGAGATGAGGGCGTTGAATTCGCGGCTAGTTCTGATCGACATCAA 61
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AAATAATTAATTAATCGTGATGAGGGCGTTGAATTCGCGGCTAGTTCTGATCGACATCAA 168
Query 62 CAGCTCATGGCAAGCTTCGCGCCGGTTAATCTCAGCCACCGCAACCGCTTTTTCATCCGA 121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 169 CAGCTCCTGGCAAGCTTCGCGCCGGTTAATCTCAGCCACCGCAACCGCTTTTTCATCTGA 228
Query 122 TTCCTCTTCCTCATTCCGTCGAACACGTGGTGCGCGTCAGAGAATCTCTTCATCGAAATC 181
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 229 TTCCTCTTCCTCATTCCGTCGGACACGTGGTGCGCGTCAGAGAATCGCTTCATCGAAATC 288
Query 182 TCCGGCGTCGTCACCGTCTCCTGTACGGAGACCATCTGATGGATTCAGTTTCGATGTTCG 241
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 289 CCCGGCGTCGTCACCGTCTCCTGTTCGGAGACCATCTGATGGATTCAGTTTCGATGTTCG 348
Query 242 GTCACCGTCAGCTGATTCGTCAAACTCTGCGTCGATCTCATCTCGGAAGTCACCGAAGAC 301
|||||||||| |||| | || | ||||||||||| ||||||||||||| |||
Sbjct 349 GTCACCGTCATCTGA-T--TC--A-------TCGATCTCATCACGGAAGTCACCGACGAC 396
Query 302 GGCTCCGCCTACGGTGGAGCTTGACGCTTTCCTCGAGATTCTTCCTCCGGCAACGAGGAA 361
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 397 GGCTCCGCCTACGGTGGAGCTCGACGCTTTCCTAGAGATTCTTCCTCCGGCGACGAGGAA 456
Query 362 GGAGCTAGTTAAGCACGAGGCGATTGACGAATTGATCGAAGTGGTGATGGATTTAGGGAG 421
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 457 GGAGCTTGTTAAGCACGAGGCGATTGAGGAATTGATCGAAGTAGTGATGGATTTAGGGAG 516
Query 422 AAAGCCACTTGCTAGATTCCCTTCCGGTGATTGGGTGATCTCAGAGCAGCCTGTGACACA 481
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 517 AAAGCCACTTGCTAGATTCCCTTCCGGCGATTGGGTGATCTCAGAGCAGCCTGTGACACA 576
Query 482 CCAGGATCTGGAGCTTGCGGTATCAAAAGTTGGCGATTTTTCAGATGATAACCGATCGGG 541
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 577 CCAGGATCTGGAGCTTGCGGTATCAAAGGTTGGTGATTTTTCGGATGATAACCGATCCGG 636
Query 542 GATTGACAGATCTTTGCATCGTATAAGCGCTATACGTAATCGCAAACTGCAAGTAATTGG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GATTGACAGATCTTTGCATCGTATAAGCGCTATACGTAATCGCAAACTGCAAGTAATTGG 696
Query 602 TCTAACATGTCGAGTGGGTCGAGTAGTATCTGGAAGTGCAGAGATTATAAGAGATTTGAT 661
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 697 TCTAACATGTCGAGTGGGTCGAGTAGTCTCTGGAAGTGCAGAAATTATAAGAGACTTGAT 756
Query 662 AGAAGGAGGAGGATCCATCTTGGTCATAGGATCTCCTGGAGTTGGCAAAACAACTTTAAT 721
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 757 TGAAGGAGGAGGATCCATCTTGGTCATTGGATCTCCTGGAGTTGGCAAAACAACTTTAAT 816
Query 722 CAGAGAAATCGCACGGATGTTAGCTGATGAACACAGGAAACGTGTAGTGATTGTTGACAC 781
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CAGAGAAATTGCACGGATGTTAGCTGATGAACACAGGAAACGTGTAGTGATTGTTGACAC 876
Query 782 GTCAAATGAGATTGGAGGTGATGGTGATGTTCCTCATTCTGGAATTGGCCGTGCCAGGCG 841
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 877 GTCAAATGAGATTGGAGGTGATGGTGATGTTCCTCATTCTGGAATTGGTCGTGCCAGGCG 936
Query 842 GATGCAAGTTCCAAATGTGAATTTACAGCACGATGTTATGATTGAGGCGGTTGAGAATCA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GATGCAAGTTCCAAATGTGAATTTACAGCACGATGTTATGATTGAGGCGGTTGAGAATCA 996
Query 902 TATGCCTGAGACAATCATCATCGACGAGATAGGAACTGAGCTTGAAGCTTTAGCTGCTAG 961
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 997 TATGCCTGAGACAATCATCATTGACGAGATAGGAACTGAGCTTGAAGCTTTAGCTGCTAG 1056
Query 962 CACTATTGCTCAACGAGGTGTTCAGCTTGTTGCAACTGCTCATGGGATGACTATAGACAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CACTATTGCTCAACGAGGTGTTCAGCTTGTTGCAACTGCTCATGGGATGACTATAGACAA 1116
Query 1022 CATAATCAAAAATCCTTCTTTGCAAATTCTTATTGGTGGAATTGAGAGTGTGACTCTTGG 1081
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1117 CATAATCAAAAATCCTTCTTTGCAGATTCTTATTGGTGGAATTGAGAGTGTGACTCTTGG 1176
Query 1082 TGATGAAGAAGCAAGGAAAAGAAAAGTGCAGAAGACAATTCTTGAAAGAAAAGGACCTCC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGATGAAGAAGCAAGGAAAAGAAAAGTGCAGAAGACAATTCTTGAAAGAAAAGGACCTCC 1236
Query 1142 CACATTTACTTGTGCTGTAGAGATGATATCGAGAACTGAGTGTCGTGTTCATCAAAGACT 1201
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GACATTCACTTGTGCTGTAGAGATGATATCGAGAACTGAGTGTCGTGTTCATCAAAGACT 1296
Query 1202 AGATGTCACCGTTGATGCTATACTAGCTGGGAAATCCGCCCCATTTGAGATCCGTCAAAT 1261
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1297 AGATGTTACCGTTGATGCTATACTAGCTGGGAAATCCGCTCCATTTGAGATCCGTCAAAT 1356
Query 1262 TCGTGGCGAAGACGATGTTCCTCATAAGTTAGTGACTCCCATTCCTTTGGAGAAACTTGA 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1357 TCGTGGCGAAGACGATGTTCCTCATAAGTTAGTGACTCCCATTCCTTTGGAGAACCTTGA 1416
Query 1322 AGAGGAGCCTGCACCATTGCTCAACAGAGATTTCGTAAGTGAAGTGCTGTCTGACGATGA 1381
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1417 AGAGGAGCCTGCACCATTGCTCAACAGAGATTTCGTAAGTGAATTGCTGTCTGACGATGA 1476
Query 1382 AGATGAAGATTCTCTTCCCATACAGTATAATAAGGCCAGCAGTAACACATACACGAGCCC 1441
||||||||||| ||||| ||| | || |||||||||||| ||||||||||||||||||||
Sbjct 1477 AGATGAAGATTTTCTTCTCATTCGGTCTAATAAGGCCAGAAGTAACACATACACGAGCCC 1536
Query 1442 AAGAAGCTCACCGGTTCATGTTTATACTTACAATGTCCTTGAAGCTGATCTCCTTCAAGT 1501
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1537 AAGAAGCTCACCGGTTCATGTGTATACTTACAATGTCCTTGAAGCTGATCTCCTCCAAGT 1596
Query 1502 AGCCGAAGTTATGGGCCTAGATGACGAAATAGAAGTGACAGATGATGTTGGGGAAGCAGA 1561
||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1597 AGCTGAAGTTATGGGTCTAGACGACGAAATAGAAGTGACAGATGATGTTGGAGAAGCAGA 1656
Query 1562 TGTCATTCTAGCCTCTAGTTCTGAATTGAAACAAAATTCGTCGATCCGTCGTGTTGCCAA 1621
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1657 TGTCATTCTAGCCTCAAGTTCTGAATTGAAACAGAATTCATCAATCCGTCGTGTTGCCAA 1716
Query 1622 ATTACACAAGCTACCGATATTTGTCATTAAGTCAACTACTATGGCTCAGATGGTGAAGGC 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 ATTACACAAGCTACCGATATTTGTCATTAAGTCAACTACTATGGCTCAGATGGTGAAGGC 1776
Query 1682 AGTCCGAATGATCCTTGGAAGAGAATCATTTGGCTCTGCCCCTGAAAAC-ATAGAGAAAT 1740
||||||||||||||||||||| |||||||||||||| |||||| ||| | ||||| ||||
Sbjct 1777 AGTCCGAATGATCCTTGGAAGGGAATCATTTGGCTCAGCCCCT-AAAGCCATAGAAAAAT 1835
Query 1741 CTTCTGTTGATGATATCGAGATCAAAGGTGATGCTCCCGAGAGCAAACCCAGTTTAGAAG 1800
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1836 CTTCTGTTGATGATATCGAGATCAAAGATGATGCTCCTGAGAGCAAACCCAGTTTAGAAG 1895
Query 1801 AACTTGATGCCCTCGAGGAAGTCCGTCTAGCAATAGAATATATTGTAATCCCGGGAGGTG 1860
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1896 AACTCGATGCCCTTGAGGAAGTCCGTCTAGCAATCGAATATATTGTAATCCCGGGAGGTG 1955
Query 1861 AACCAGTGGAGCTTCTTCCTAGACGGTCAGACATAATAGTTAGGCAGCTAGAGCTGGTGG 1920
||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1956 AACCAGTGGAGCTTCTTCCTAGACGATCAGATATAATAGTTCGGCAGCTAGAGCTGGTGG 2015
Query 1921 AGAGTTACCAACTCGCCGTTGAGAACCTCGGCACTCATCTTAATCCGCGCCTTCAGATTC 1980
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2016 AGAGTTACCAACTCGCAGTTGAGAACCTCGGCACTCACCTTAATCCGCGCCTTCAGATTC 2075
Query 1981 TTCCTCGCCGATCAACCAAGAAGACGTTGTCATCTTCATCCCCTCAAAAAGCAGCAGATG 2040
||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 2076 TTCCTCGCCGATCAACCAAGAAGACGTTGACATCTTCATCCCCCCAAAAATCAGCAGATG 2135
Query 2041 ATAGCATGGGGACTACGGGTACTCGTCTTCCTTTCCTTAAGGATTGACATCTCTGACTTC 2100
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2136 GTAGCATGGGGACTACGGGTACTCGTCTTCCTTTCCTTAAGGATTGACATGTCTGACTTC 2195
Query 2101 AGCATAT 2107
|||||||
Sbjct 2196 AGCATAT 2202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104467334145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5