BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928829
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11160.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 73.1 1e-12
> AT3G11160.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink). | chr3:3496067-3497163 REVERSE LENGTH=714
Length=714
Score = 73.1 bits (39), Expect = 1e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 16 CGATCATGGCACCGAACAACAATCTGAGATCCGTAATCGCGCAGT 60
|||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 102 CGATCATGCCACCGAACAACAATCTGAGATCCGTAATCGCTCAGT 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728450457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5