BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928915
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate prenylt... 1555 0.0
> AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate prenyltransferase
| chr3:3779839-3782954 REVERSE LENGTH=1458
Length=1458
Score = 1555 bits (842), Expect = 0.0
Identities = 916/951 (96%), Gaps = 7/951 (1%)
Strand=Plus/Plus
Query 240 GGTTGGTGCTGCTG-G---GACTGATCCAGTGCTGGATAGAATTACCCGGTTCCAAAATG 295
|||||||||||||| | || |||||||||||||||||||||| |||||||||||||||
Sbjct 314 GGTTGGTGCTGCTGAGTCTGA-TGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATG 372
Query 296 CTTGCTGGAGATTTCTTAGGCCCCATACAATCCGTGGAACAGCTTTAGGATCCACCGCCT 355
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 373 CTTGCTGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCACTGCCT 432
Query 356 TGGTGGCAAGAGCTTTGATAGAGAATACTCATCTGATCAAATGGAGTCTTGTACTCAAGG 415
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 433 TGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAGTCTTGTACTAAAGG 492
Query 416 CACTTTCAGGTCTTCTTGCTCTTATATGTGGGAATGGTTATATAGTCGGCATCAATCAGA 475
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 493 CACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGA 552
Query 476 TCTACGACATTGGTATCGACAAAGTGAACAAACCATATTTGCCAATAGCAGCAGGAGATC 535
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 553 TCTACGACATTGGAATCGACAAAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATC 612
Query 536 TATCAGTGCAATCTGCCTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTG 595
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TATCAGTGCAGTCTGCTTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTG 672
Query 596 TTGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAA 655
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TCGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAA 732
Query 656 CCATCTATTCTGTTCCACCGCTTAGAATGAAAAGATTCCCAATTGCAGCATTTCTTATTA 715
||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 733 CCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTA 792
Query 716 TTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTC 852
Query 776 TTGGACTTCCATTTCAGTGGAGTGCCCCTGTGGCGTTCATCACATCTTTTGTGACACTGT 835
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 853 TTGGACTTCCATTTCAGTGGAGTGCACCTGTGGCGTTCATCACATCTTTTGTGACACTGT 912
Query 836 TTGCACTGGTCATTGCTATTACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTTCC 895
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 913 TTGCACTGGTCATTGCTATTACAAAGGACCTTCCTGATGTTGAAGGAGATCGAAAGTTCC 972
Query 896 AAATATCAACCTTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGAC 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AAATATCAACCCTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGAC 1032
Query 956 TTCTGCTAGTGAACTATGTTTCTGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTCA 1015
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1033 TTCTGCTAGTAAATTATGTTTCAGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTTA 1092
Query 1016 GAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTC-GTGCTTAATTTTCCAGACA 1074
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1093 GAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAG-GCTTAATTTTCCAGACA 1151
Query 1075 TGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATAGGTTTATA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1152 TGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATCGGTTTATA 1211
Query 1135 TGGAATCTCTTCTACGCAGAGTATCTGTTATTTCCCTTCCTCTAGCTTTCA 1185
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1212 TGGAATCTCTTCTACGCAGAGTATCTGTTATTCCCCTTCCTCTAGCTTTCA 1262
Score = 320 bits (173), Expect = 2e-86
Identities = 181/185 (98%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 1 TTTGTGTGGCTAGTGGCATCAATGGAGCTCTCGATCTCGCAATCACCGTGTGTTCGGTTC 60
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 54 TTTGTGTGGCTAGTGGCATCAATGGAGCTCTCGATCTCACAATCACCGCGTGTTCGGTTC 113
Query 61 TCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTTCTTCTGTGCATTTA 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 114 TCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTCCTTCTGTGCATTTA 173
Query 121 GCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTAGCTTCACGAGCTTATCAACTTCAAGA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 174 GCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTCGCTTCACGAGCTTATCAACTTCAAGA 233
Query 181 ATGCG 185
|||||
Sbjct 234 ATGCG 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5