BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928955 Length=865 Score E Sequences producing significant alignments: (Bits) Value AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1330 0.0 > AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:3923735-3925465 FORWARD LENGTH=1218 Length=1218 Score = 1330 bits (720), Expect = 0.0 Identities = 784/816 (96%), Gaps = 0/816 (0%) Strand=Plus/Plus Query 50 TGAAGAGCTTGTTGTGCCTAGTTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 109 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 220 TGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 279 Query 110 TATGTGGGGTGGATGGAGCATGAGCTCTCCTGAAGTAGCTGAGAAATGTTTCGATTACGA 169 ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 280 TATGTGGGGTGGATGGAGCATGAGCTCCCCTGAAGCAGCTGAGAAATGTTTCGATTACGA 339 Query 170 TGGATTCAATGGAGGAGGAATGATGTATAGTCAGATGGGTATGAGGACAAGTGAAGAAGA 229 ||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 340 TGGTTTCAATGGAGAAGGAATGATGTATAGTCAGATGAGTATGAGGACTAGTGAAGAAGA 399 Query 230 AGAAGAGTCTAAGAGATCTAAGGCTTTCTACGGTGCTTCTTCACTTCATGATTTCGAAGG 289 |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct 400 AGAAGAGTCTAAAAGATCAAAGGCTTTCTATGGTGCTTCTTCACTTCACGATTTCGAAGG 459 Query 290 AATTGAACAGATGGATGATATATTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 349 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 460 CATCGAACAGATGGATGATATGTTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 519 Query 350 TGGAGATGTTCACCGTGCGTCCAGCAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 409 ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 520 TGGAGATGTTCACCGCGCGACCAGTAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 579 Query 410 TGGTGGTAGAGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 469 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 639 Query 470 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAATT 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 640 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACT 699 Query 530 GTCTTCTGAAGAACTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACCGATGA 589 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 700 GTCTTCTGAAGAATTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACTGATGA 759 Query 590 GACACGCAAATGTTTCCGGGATACCTTTTACCGACTTGCAAGGAGCTCGCAAGATAACTC 649 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 760 GACACGCAAATGTTTCCGGGATACTTTTTACCGACTTGCAAGGAGCTCACAAGATAAATC 819 Query 650 GGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTGTGCAAACGTCTAGATATGATTATGG 709 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 820 TGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTATGCAAACGTCTAGATATGATTATGG 879 Query 710 TGATGGAAACAGGTTGAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 769 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 880 TGATGGAAACAGGTTTAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 939 Query 770 AGCCGTCGCAAACCTCACATTTAACAAAATGGAATCCAACATAAGCAATTTTCCGCTGTC 829 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 940 AGCTGTCGCAAACCTCACATTCAACAAAATGGAATCCAACATAAGCAATTTTCCTCTGTC 999 Query 830 GGAGAGAGTACAGTAGCTGCCACTGATCAAGATCAA 865 ||| ||||||||||||||||| |||||||||||||| Sbjct 1000 GGAAAGAGTACAGTAGCTGCCGCTGATCAAGATCAA 1035 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42196683480 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5