BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928959 Length=1310 Score E Sequences producing significant alignments: (Bits) Value AT3G12350.1 | Symbols: | F-box family protein | chr3:3931564-3... 1982 0.0 > AT3G12350.1 | Symbols: | F-box family protein | chr3:3931564-3933356 FORWARD LENGTH=1583 Length=1583 Score = 1982 bits (1073), Expect = 0.0 Identities = 1221/1294 (94%), Gaps = 3/1294 (0%) Strand=Plus/Plus Query 1 AGAAATTTCGTCTGAGAAAA-ATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAA 59 |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 42 AGAAGTTTCATCTGAGAAAAGATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAG 101 Query 60 GATCTCCAGCTCCGCATCTTGTCATTCCTCTCCCCAGCAGAGATCTCCAGCTTCGCCTGC 119 |||||||||||||| ||||| || ||||| | ||||| ||||||||||||||||||||| Sbjct 102 GATCTCCAGCTCCGAATCTTATCCCTCCTCACACCAGCGGAGATCTCCAGCTTCGCCTGC 161 Query 120 ACATCTAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 179 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 ACATCGAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 221 Query 180 GATCAGCGATGGGGCAAGAAAACGAAGATCCAGAAATGGGGAAATGGTCAAATCCCTTAT 239 |||||| ||||||| |||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct 222 GATCAGAGATGGGGGAAGAAAACTAAGATCCAGAAATGGGCAAACGGTCAAATCCCTTAT 281 Query 240 AGACTCCTTTACAAGACTCTAAAGGGATTGGAAAATCTTATTGGATTCTGGCGTCTCTGC 299 |||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 282 AGACACCTTTACAAGACTCTAAAGGGATTGGAGAATCTAATTGGCTTCTGGCGTCTCTGC 341 Query 300 GGCAGAGCAAATCCCGCAGCTTCATCGCCACCGCTTGtttttttCGATTGGGGGCCTTCT 359 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 342 GGCAGAGCAAATCCCGCCGCTTCATCGCCGCCGCTTGTTTTCTTCGATTGGGGTTCTTCT 401 Query 360 TTTGTATTGGGATCTAGAGTTTTATCTACCGGAGATGAAACTTATCAGGTAAAAAAGACA 419 ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| Sbjct 402 TTTATATTGGGATCTAGAGTTTTATCCACCGGAGATGATACTTATGAGGTAAAGAAGACA 461 Query 420 CCTTTTCTCTTATTGGGGATTTCGTCGGAGGGACGAACTGAGAATTTCTTGGATCTCGTC 479 |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 462 CCTTTTCTCTTAATGGGGATTTCGCCGGAGGGACGATCTGAGAATTTCTTGGATCTCGTC 521 Query 480 GGAGGTTATCTCAGATCTGTGGATGATGATCTGAAAGAATTAGAAGCTTCTGACAATCTC 539 || ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 522 GGTGGTAATCTCAGATCTGTGGATGATGATTTGAAAGAATTAGAAGCTTCTAACAATCTC 581 Query 540 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGC 599 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGT 641 Query 600 TTTATCAACAACAGTCTTAGAGAAGAGCAGAAGAGCTCAGGGGACGAGAGTGATGATTTG 659 |||| |||||||| || ||||||||| |||| |||||||||||| ||||||||||||||| Sbjct 642 TTTACCAACAACAATCGTAGAGAAGACCAGAGGAGCTCAGGGGATGAGAGTGATGATTTG 701 Query 660 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAACTGGCGAATAAGACGAGTCCAGGC 719 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 702 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAATTGGCGAATAAGACGAGTCCAGGC 761 Query 720 GGTGACaggaggagacagaggaggaaggagaaggagaggCAAGCGTCGAGGACTAAGTGG 779 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 762 GGTGACAGGAGGAGACAGAAGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGG 821 Query 780 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAAACCATTACAA 839 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 822 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAGACCCTTACAA 881 Query 840 GGTTTATGGAAGGGTTTCTGTGAGGGAAGCATGGAGTTATATCTGGTCAAATACGATGAA 899 || ||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct 882 GGCTTATGGAAGGGTTTCTGTGAGGGAAGCATCGAGTTGTATTTGGTCAAATATGATGAA 941 Query 900 GTTGGAGGCATTGTATGCAGAAAAGTAGAGGACTTGTCTCTCTCACGGCACACTCCTCCT 959 |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 942 GTTGGAGGCATTATATGCAGAAAAGTAGAGGACTTGTCCCTCTCACGGTACACTCCTCCT 1001 Query 960 GTGTTCTGGACACCCAAACATGCGTTTATCAGATCTCCCTTTTCAGCTGAAGAAGAGCTG 1019 ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| Sbjct 1002 GTGTTCTGGACACCCAAACATACGTTCATCAGATCTCCTTTTTCAGCTGAAGAAGAGCTG 1061 Query 1020 CTACTGAATAGTCGAATCCATATTAGCCCTCTCGCCGAAGTTCATGAAAATGTTGTATCT 1079 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1062 CTACTGAATAGTCGAATCCATATTAGCCCTTTCGCTGAAGTTCATGAAAATGTTGTATCT 1121 Query 1080 GGAATGTTGTACATGAAGTCTAGTTACGATCTGGTGTTGCCAGGAGAAGC-GGCCAATGG 1138 ||||||||||||||||||||||| | |||||||||||||||||||||| | ||| ||||| Sbjct 1122 GGAATGTTGTACATGAAGTCTAGCTGCGATCTGGTGTTGCCAGGAGAACCTGGC-AATGG 1180 Query 1139 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGAAAATGGGACTTTCGGTTT 1198 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1181 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGACAATGGGACTTTCGGTTT 1240 Query 1199 CGGGTTTCTTCGAGATCAATTTGTCATTGATCTGAAACGTGTTGCCCTGGAAGATGGTTG 1258 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || Sbjct 1241 CGGGTTTCTTCGAGATCAATTTATCATTGATCTGAAACGTGTTGCTCTGGAAGATGGGTG 1300 Query 1259 TCTAGCTGACGAGGTAGAAGCGTCTATGTGATTT 1292 ||||||||||||||||||||| | |||||||||| Sbjct 1301 TCTAGCTGACGAGGTAGAAGCTTGTATGTGATTT 1334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64457499780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5