BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929072 Length=1384 Score E Sequences producing significant alignments: (Bits) Value AT3G13340.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2290 0.0 AT1G55680.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1363 0.0 > AT3G13340.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:4331756-4335073 FORWARD LENGTH=2055 Length=2055 Score = 2290 bits (1240), Expect = 0.0 Identities = 1336/1384 (97%), Gaps = 0/1384 (0%) Strand=Plus/Plus Query 1 TTTATTTATCTACCAAAAGAATGTCCAATTATCAAGGAGATGATGCTGAGTACATGGAAG 60 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 222 TTTATTTATCTACCAAAAGAATGTCTAATTATCGAGGAGATGATGCTGAGTACATGGAAG 281 Query 61 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGACGAGTTTCGTGGCGATG 120 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 282 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGAGGAGTTTCGTGGTGATG 341 Query 121 ATCTTGGTGCTTCTGATTCTGACGTTGAGGAATTTGACTACTCGAATAATAAAGTAGCTG 180 ||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 342 ATCTTGGTGCTTCAGATTCTGACGTTGAAGAATTTGACTATTCGAACAATAAAGTAGCTG 401 Query 181 ATACCTCGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGAC 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 ATACCACGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGAC 461 Query 241 TTAGTATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAA 300 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 TTAATATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAA 521 Query 301 ATGTCCCTAATTCTGGGGAATCCTCAGAAAAGGTTTGCAAGGTCACACAGAAAGGGGGAC 360 |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| Sbjct 522 ATGTCCCTAATTCTGGAGAATCATCAGAAAAGGTTTGCAAGGTCACACAGAAAGGAGGAC 581 Query 361 TATTTTATGATTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGC 420 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 TATTTTATGACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGC 641 Query 421 TGAGGAATTTGGTGTGGGCAACTTCTAAGCATGACGTGTATCTTATGTCAAACTTCCTGG 480 |||| |||||||| ||||||||||||||||| |||||||||||||||||||| || |||| Sbjct 642 TGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCAAATTTTCTGG 701 Query 481 TTACACATTATTCTTCTCTAACTTCCGGAAAGCATGAAGTTCTCAATGTTCGTGGTCATG 540 |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| Sbjct 702 TTACACATTATTCTTCTCTAACGTCTGGAAAGCATGAAGTTCTCAATGTCCGTGGTCATG 761 Query 541 TTGCACCATCCGAGAAACATCCTGGAAGTTTACTTGAAGGATTTACGCAAACTCAAGTAA 600 |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 762 TTGCGCCATCTGAGAAACATCCTGGAAGTTTACTTGAAGGATTTACGCAGACTCAAGTAA 821 Query 601 GTACACTTGCAGTAAAAGACGACTTTCTAGTTGCTGGCGGGTTTCAAGGAGAACTTATTT 660 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 822 GTACACTTGCAGTAAAAGATGACTTTCTGGTTGCTGGCGGGTTTCAAGGAGAACTTATTT 881 Query 661 GCAAGCATCTTGATAGACCAGGTGTCAGCTTTTGCTCTCGTACGACTTATGATGATAATG 720 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 882 GCAAGCATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATGATAATG 941 Query 721 CTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCCT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 942 CTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCGT 1001 Query 781 CGAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATT 840 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 CAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATT 1061 Query 841 TCCGTTTTCCTTGGCCAGTGAATCACGCTTCTTTGAGTCCTGATGGTAAATTACTGGCTA 900 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1062 TCCGTTTTCCTTGGCCAGTGAATCACGCATCTTTGAGTCCTGATGGTAAATTACTGGCTA 1121 Query 901 TTGTTGGAGACAACCCGGAGGGCCTTATAGTAGACCCCAACACAGGAAAGACGTTGGAAA 960 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1122 TTGTTGGAGACAACCCGGAGGGCCTTATTGTAGACCCCAACACAGGAAAGACGTTGGAAA 1181 Query 961 CTCTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTT 1020 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 CACTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTT 1241 Query 1021 TCTCAACAGGAAACCAGGACAAGACTTGCCGTGTATGGGACATCCGAAACCTATCTAAGT 1080 |||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||| ||| Sbjct 1242 TCTCTACAGGAAACCAAGATAAGACTTGTCGTGTATGGGACATCCGTAACCTATCTCAGT 1301 Query 1081 CCGTTGCTGTCTTGAAGGGTAACCTAGGAGCAATCCGGTCAATCCGCTACACATCAGATG 1140 | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1302 CTGTTACTGTCTTGAAGGGTAACCTGGGAGCAATCCGGTCAATCCGCTACACATCAGATG 1361 Query 1141 GAAAATACATGGCCATGGCTGAACCAGCTGACTTTGTCCATGTCTATGATGTCTCAAACG 1200 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1362 GAAAATACATGGCCATGGCTGAACCGGCTGACTTTGTCCATGTCTATGATGTCTCAAACG 1421 Query 1201 GGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAGATCTCAGGAATATCTTTCAGCC 1260 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1422 GGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAAATCTCTGGAATATCTTTCAGCC 1481 Query 1261 CTGACACAGAGGCGCTGTTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGT 1320 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1482 CTGACACAGAGGCGCTATTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGT 1541 Query 1321 TTGGTCGGCGCAGGAACTATTCCTACCTTGACTCGTATCTTTAAGCAAGAAGAGAAGTAT 1380 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1542 TTGGTCGGCGCAGGAACTATTCCTACCTTGACTCGTATCTTTAAGCTAGAAGAGAAGTAT 1601 Query 1381 ACAC 1384 |||| Sbjct 1602 ACAC 1605 > AT1G55680.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:20804592-20807940 REVERSE LENGTH=1960 Length=1960 Score = 1363 bits (738), Expect = 0.0 Identities = 1148/1346 (85%), Gaps = 28/1346 (2%) Strand=Plus/Plus Query 17 AAGAATGTCCAATTATCAAGGAGATGATGCTGAGTACATGGAAGACGTAGATGATGAGAT 76 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| || Sbjct 223 AAGAATGTCTAATTATCAAGGGGATGATGCTGAGTACATGGAAGATGTGGATGATGAAAT 282 Query 77 GGAAGATGTTGAAGATGATATGGATGACGAGTTTCGTGGCGATGATCTTGG-TGCTTCTG 135 | || ||| |||||| | ||||| || |||||||| |||||| ||| ||| |||| Sbjct 283 -G--GA---TGAGGATGATTTAGATGAGGATTTTCGTGGGGATGAT-ATGGCTGCCTCTG 335 Query 136 ATTCTGACGTTGAGGAATTTGACTACTCGAATAATAAAGTAGCTGATACCTCGGCTGAGC 195 |||| || || || || ||||||||||| ||||||||| ||||||| || || ||||| | Sbjct 336 ATTCCGATGTCGATGAGTTTGACTACTCTAATAATAAAATAGCTGACACTTCAGCTGACC 395 Query 196 AAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGACTTAGTATTTCTAGAG 255 |||| |||||||||||||| |||||||||||||| |||||||| ||||||||| | |||| Sbjct 396 AAGCCCGGAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACGAGAG 455 Query 256 AGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAAATGTCCCTAATTCTG 315 ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| Sbjct 456 AGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAACTCTG 515 Query 316 GGGAATCCTCA-GAAAAGGTTTGCAAGGTCACACAGAAAGGGGGACTATTTTATGATTTC 374 ||||||| ||| | ||| | ||||| || |||||||||||||| || |||||||||||| Sbjct 516 GGGAATCTTCAGGGAAA-GATTGCATGGCCACACAGAAAGGGGCTCTTTTTTATGATTTC 574 Query 375 TGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGCTGAGGAATTTGGTG 434 ||||||||| || ||||||| || || | ||| || ||||||||| ||||||||||||| Sbjct 575 TGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTGGTT 634 Query 435 TGGGCAACTTCTAAGCATGACGTGTATCTTATGTCA-AACT-TCCTGGTTA-CACATTAT 491 ||||||||||||||||| || || || ||||||||| || | | |||| | | || ||| Sbjct 635 TGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAA-TAT-TTGGTGAGC-CACTAT 691 Query 492 TCTTCTCTAACTTCCGGAAAGCATGAAGTTCTCAATGTTCGTGGTCATGTTGCACCATCC 551 ||| || | || |||||||||||||| ||||||||||||| ||||||||| | ||||| Sbjct 692 TCTACTTTGACATCCGGAAAGCATGATGTTCTCAATGTTCAAGGTCATGTTTCCCCATCT 751 Query 552 GAGAAACATCCTGGAAGTTTACTT-GAAGGATTTACGCAA-ACTCAAGTAAGTACACTTG 609 |||||||||||||||||||| || || |||||||| || |||||||| |||||||| | Sbjct 752 GAGAAACATCCTGGAAGTTT-GTTGGAGGGATTTAC-AAAGACTCAAGTGAGTACACTCG 809 Query 610 CAGTAAAAGACGACTTTCTAGTTGCTGGCGGGTTTCAAGGAGAACTTATTTGCAAGCATC 669 |||| | ||| | ||| ||||||| || || ||||||||||||||||| |||||||||| Sbjct 810 CAGTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATC 869 Query 670 TTGATAGACCAGGTGTCAGCTTTTGCTCTCGTACGACTTATGATGATAATGCTATAACCA 729 |||||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||| Sbjct 870 TTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCA 929 Query 730 ATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCCTCGAATAATG 789 ||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||| Sbjct 930 ATGCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCGTCGAATAATG 989 Query 790 ACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCA-TTTCCGTTTT 848 | |||||||| ||||| ||||| ||||||||||||||||||||||| || ||| || ||| Sbjct 990 ATTGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCAGTTT-CGCTTT 1048 Query 849 CCTTGGCCAGTGAATCACGCTTCTTTGAGTCCTGATGGTAAATTACTGGCTATTGTTGGA 908 || ||||| ||||||||| | ||||| ||||||||||||||||| || | ||||| ||| Sbjct 1049 CCATGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTGTTGACGATTGTGGGA 1108 Query 909 GACAACCCGGAGGGCCTTATAGTAGACCCCAACACAGGAAAGACGTTGGAAACTCTATCA 968 |||||||| || ||||| | |||||||||||||| |||||||| ||| ||| |||||| Sbjct 1109 GACAACCCTGAAAGCCTTCTGGTAGACCCCAACACTGGAAAGACACTGGCAACGCTATCA 1168 Query 969 GGACACT-TGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTTTCTCAAC 1027 ||||| | |||||||||||||||| || || ||||| || |||||| |||| ||||| || Sbjct 1169 GGACA-TCTGGACTTTTCCTTTGCATCAGCATGGCACCCAGATGGATTCACGTTCTCCAC 1227 Query 1028 AGGAAACCAGGACAAGACTTGCCGTGTATGGGACATCCGAAACCTATCTAAGTCCGTTGC 1087 ||| |||||||||||||| ||||| || |||||||| || ||||| || || || ||||| Sbjct 1228 AGGTAACCAGGACAAGACCTGCCGGGTTTGGGACATTCGTAACCTGTCAAAATCTGTTGC 1287 Query 1088 TGTCTTGAAGGGTAACCTAGGAGCAATCCGGTCAATCCGCTACACATCAGATGGAAAATA 1147 |||||||| ||||||||| ||||||||||| || || ||||||||||| ||||| || || Sbjct 1288 TGTCTTGAGGGGTAACCTTGGAGCAATCCGATCCATTCGCTACACATCTGATGGGAAGTA 1347 Query 1148 CATGGCCATGGCTGAACCAGCTGACTTTGTCCATGTCTATGATGTCTCAAACGGGTATGA 1207 ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1348 CATGGCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGA 1407 Query 1208 AACAGAGCAGGAAATCGACTTCTTTGGGGAGATCTCAGGAATATC-TTTCAGCCCTGACA 1266 ||| ||||| || ||||||||||||||||||||||| |||||||| ||| ||||| |||| Sbjct 1408 AACGGAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTT-AGCCCCGACA 1466 Query 1267 CAGAGGCGCTGTTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGTTTGGTC 1326 |||| || || || || || || |||||||||||||| || || || |||||| | | | Sbjct 1467 CAGAAGCACTCTTCATAGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATAGCC 1526 Query 1327 GGCGC-AGGAACTATTCCTACCTTGA 1351 ||||| | ||||| ||||||||||| Sbjct 1527 GGCGCCAC-AACTACTCCTACCTTGA 1551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68172340110 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5