BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929203 Length=1423 Score E Sequences producing significant alignments: (Bits) Value AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146... 1825 0.0 > AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146-4739136 REVERSE LENGTH=1644 Length=1644 Score = 1825 bits (988), Expect = 0.0 Identities = 1309/1452 (90%), Gaps = 70/1452 (5%) Strand=Plus/Plus Query 11 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCGCCGCCGAGGTCCCT 70 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 127 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCT 186 Query 71 CCGTGTCACTAGCGAGTTTATCTGGCCGGATCTGAAAAACAAAGGGAAAAAAGCTTCGAA 130 ||| ||||||| |||||||||||||||||||||||||||||||| | |||||||| || Sbjct 187 CCGCGTCACTAACGAGTTTATCTGGCCGGATCTGAAAAACAAAGTG---AAAGCTTCAAA 243 Query 131 GAAGAGATCGAATAAGCGACCCGATTTCTTCGATCTGGACGATGAATTCGAAGCTGATTT 190 ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| Sbjct 244 GAAGAGATCGAATAAGCGATCCGATTTCTTCGATCTTGACGATGATTTCGAAGCTGATTT 303 Query 191 CCGGGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACGAAATCGATGATGGTGTCTT 250 || ||||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct 304 CCAAGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACG--AT-GATGA---TGTCTT 357 Query 251 CGTCAATGTGAAGCCTTTTGTCTTCACCGCAACTACTAAACCCGTAGCTT-C-CTCT-GT 307 ||||||||| |||||||| |||||||||||||||||||| |||||||||| | || | || Sbjct 358 CGTCAATGTTAAGCCTTTCGTCTTCACCGCAACTACTAAGCCCGTAGCTTCCGCTTTCGT 417 Query 308 CCCCGTTTTCGCATCCA-CT-GTAGGATCAGCATCTGCCAAGAAAACTGTAGAGTCCGAT 365 | || | | || | | ||||| ||||||| ||||||||||||||||||||||| | Sbjct 418 CTCC--ACTGGTATATATTTGGTAGGTTCAGCATATGCCAAGAAAACTGTAGAGTCCGCT 475 Query 366 GGGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGAATTAGGCAG 425 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 476 GAGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGGATTAGGCAG 535 Query 426 CGCCCCTGGGGCAAATGGGCTGCTGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 485 || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 536 CGTCCTTGGGGAAAATGGGCTGCGGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 595 Query 486 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGACGCAGCAGCACGCAGA 545 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 596 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGATGCTGCAGCACGCAGA 655 Query 546 ATCCGAGGCACGAAAGCTAAGGTGAA-TTTCCCAGAGGAGAAGAACCCT-TC--CGTCTC 601 ||||| |||||||||||||||||||| |||||| ||||||||||||||| | ||| || Sbjct 656 ATCCGTGGCACGAAAGCTAAGGTGAATTTTCCC-GAGGAGAAGAACCCTAGCGTCGTATC 714 Query 602 CCAGAAACGTCCTACTGGTAAGACCAATAATCTTCAGAAACCAGTGGCTAAACCAAACAA 661 |||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||| Sbjct 715 CCAGAAACGTCCTAGTGCTAAGACTAATAATCTTCAGAAATCAGTGGCTAAACCAAACAA 774 Query 662 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 834 Query 722 TGATAACATGGGGAATGACTCCTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 781 || || | |||| |||||||||||||||||||||||||||||||||||||| Sbjct 835 TG---AC-------A--ACTCTTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 882 Query 782 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGC-GGAAGGTAATAATGGATTCC 840 ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| || Sbjct 883 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGCTGGA-GGTAACAATGGATACC 941 Query 841 AGTATTTCAGTTCCGATCAGGGAAGTAACTCATTCGACTGCTCTGAGTTCGGGTGGAGTG 900 |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 942 AGTATTTCAGTTCCGATCAGGGCAGTAACTCCTTCGACTGTTCTGAGTTCGGGTGGAGTG 1001 Query 901 ATCACGGCCCCAAAACACCTGAGATCTCTTCAATGCTTGTCAATAACAACCAAGCACCAT 960 |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 1002 ATCACGGCCCTAAAACACCCGAGATCTCTTCAATGCTTGTCAATAACAACGAAGCATCAT 1061 Query 961 TCGTTGAAGAAACCAATGCAGCAAAGAAGCTCAAACCCAACTCTGATGATTCAGACGATC 1020 | |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 1062 TTGTTGAAGAAACCAATGCAGCCAAGAAGCTCAAACCAAACTCTGATGAGTCAGACGATC 1121 Query 1021 TGATGGCATACCTTGACAACGCCTTATGGGACACTCCACTAGAAGTGGAAGCCATGCTTG 1080 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1122 TGATGGCATACCTTGACAACGCCTTGTGGGACACCCCACTAGAAGTGGAAGCCATGCTTG 1181 Query 1081 GTGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAATGGA-CGTATGGAGCTTA 1139 | ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| Sbjct 1182 GCGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAGTGGAGC-TATGGAGCTTA 1240 Query 1140 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGCTTG 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1241 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGTTTG 1300 Query 1200 TAAATAAAGCTGTGTGTTGGATTCTGCTGTTGGGGGGTGGTACAAGTCACACTTGAAGCT 1259 ||||||||||||||| | ||||| |||||||||||| ||||||||||||||| | ||||| Sbjct 1301 TAAATAAAGCTGTGT-T-GGATTTTGCTGTTGGGGGATGGTACAAGTCACACCTCAAGCT 1358 Query 1260 CGT-TGCATTGGT-T-TC-T-----T-------AT-GAG--TCTCTCTTTTAATTTTGTT 1300 | | ||||||||| | || | | || ||| | |||||||||||||||| Sbjct 1359 C-TATGCATTGGTATCTCATGAGCCTCTCTTCCATAGAGAGTTTCTCTTTTAATTTTGTC 1417 Query 1301 GAAATAAAAA-GGTGTGATGAAGTAAATAGAGGTGTAATA-T--CTATCTAATGAGTCTT 1356 |||||||||| ||||||||||||||||||||||| ||||| | ||||||| | |||||| Sbjct 1418 GAAATAAAAAAGGTGTGATGAAGTAAATAGAGGTATAATAATATCTATCTATTAAGTCTT 1477 Query 1357 GTTTC---CTT-CAttttttgtttttCTTT-CTATTTAAAAGACAGTTTATTTAATCTTC 1411 |||| ||| ||||||| || ||||||| ||||||||||||||||||||| | ||||| Sbjct 1478 GTTTTGTTCTTTCATTTTT-GTATTTCTTTTCTATTTAAAAGACAGTTTATT-AGTCTTC 1535 Query 1412 TGAGCTATCTTT 1423 |||||| ||||| Sbjct 1536 TGAGCTCTCTTT 1547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70130161365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5