BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929238
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14560.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 828 0.0
> AT3G14560.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:4889072-4890159 FORWARD LENGTH=1088
Length=1088
Score = 828 bits (448), Expect = 0.0
Identities = 486/505 (96%), Gaps = 0/505 (0%)
Strand=Plus/Plus
Query 1 CTCTTTCTCTCTTCTCACAAATGGCGTCTACGCAATATGGGTTTGATCATCAAAGCGGCG 60
|||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 277 CTCTTTCTCTCTTCTCACAAATGGCGTCTACGCAATATGGTTTTGAACATCAAGGCGGCA 336
Query 61 TGGAGGTTATCAACGACGAGCTTATCATGTCGTTTTTGGAAGAAGAATCCCCCGTCGAAA 120
||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 337 TGGAGATTATCAACGATGAGCTTATCTTGTCGTTTTTGGAAGAAGAATCGCCCGTCGAAA 396
Query 121 ATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGATCGCTAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 397 ATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGGTCGCTAG 456
Query 181 AAGTGGAGATCAACATGAGTTCTCCGACCATAGAAGCTAGGAAAATGGATCTGCAACAGA 240
||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 457 AAGTGGAGATCAACATGAGTTCTCCAACCATAGAAGCTAGGAAAATGAATATGCAACAGA 516
Query 241 CGATAACCGGTCTTGAAGATGATTTCGGGTGGCTTAACGACTTTGATATTGGTATGATTT 300
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 517 CGATATCCGGTCTTGAAGATGATTTTGGGTGGCTTAACGACTTTGATATTGGTATGATTT 576
Query 301 CGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTG 636
Query 361 TGGTAGATAGTAGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TGGTAGATAGTGGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATG 696
Query 421 GACTTACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGT 480
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CACTCACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGT 756
Query 481 ATTAATCGATTTCGTGAAGTCATAA 505
||| || ||||||||||||||||||
Sbjct 757 ATTGATTGATTTCGTGAAGTCATAA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24112390560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5