BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929306 Length=635 Score E Sequences producing significant alignments: (Bits) Value AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20... 898 0.0 > AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20, putative | chr3:5116141-5117615 FORWARD LENGTH=887 Length=887 Score = 898 bits (486), Expect = 0.0 Identities = 593/641 (93%), Gaps = 22/641 (3%) Strand=Plus/Plus Query 1 AGA-GAAGCTTGTAGAAATAGATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACC 59 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 55 AGAGGAAGCTTGTAGAAATCGATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACC 114 Query 60 CTCGAATCCCAATTCAAAGTCCTTTCTCTTAAGGGAA--------TC-TCATCATCTTCT 110 |||||||||||||||||||||||||| |||||||||| || ||| |||||||| Sbjct 115 CTCGAATCCCAATTCAAAGTCCTTTCGCTTAAGGGAATCTCTTGTTCGTCACCATCTTCT 174 Query 111 TCCTTCTCCAATCGTCGTGGTGGTGCTTCGGCTACTTTATGCTCTTCCCTTAGCTTCTCT 170 |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| Sbjct 175 TCCTTCTCCAATCGTC---GTGGTGCTTCGGCTACCTTATCCTCTTCCCTTAGCTTCTCT 231 Query 171 CAGAGCGTTTCTCAATGCGTCGCCTTCTCCTCCGGGAATTTGTGGGTACAGAAGCCAATG 230 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 232 CAGAGCGTTTCTCAATGCGTCGCCTTCTCAACCGGGAATTTGTGGGTACAGAAGCCAATG 291 Query 231 AGGCAATTGATTGTGTGTGAGGCTGCTGCTCCGACGAAGAAAGCTGATTCAGCTGCAAAG 290 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 292 AGGCAATTGATTGTGTGTGAGGCTGCTGCTCCTACCAAGAAAGCTGATTCAGCTGCAAAG 351 Query 291 AGAGCTCGCCAAGCCGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGT 350 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 AGAGCTCGCCAAGCTGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGT 411 Query 351 ACACGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTTAAGAAGAAAACTGATGCGCAA 410 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 412 ACCCGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTCAAGAAGAAAACTGATGCGCAA 471 Query 411 CCTGATGAGATTGTGACTGTGGAGAAACTAATAGGAGAGGCTTATTCTGCTATAGACAAA 470 |||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||| Sbjct 472 GCTGATGAGATTGTGACGGTGGAGAAACTGATAGGAGAGGCTTATTCTGCAATTGACAAA 531 Query 471 GCAGTCAAGGTTAAAGCGCTACACAAGAACACTGGTGCACGTAGAAAGTCTCGGTTGGCT 530 ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||| Sbjct 532 GCAGTGAAGGTTAAAGCACTACACAAGAACACTGGTGCCCGTAGGAAGTCTCGATTGGCT 591 Query 531 AGGAGGAAAAAAGCCGTTGAGATTCACCACGGTTGGTACGTCCCAGATGCAG-T-----A 584 |||||||||||||||||||| |||||||| ||||||||||||||||| |||| | | Sbjct 592 AGGAGGAAAAAAGCCGTTGAAATTCACCATGGTTGGTACGTCCCAGACGCAGCTGCTGCA 651 Query 585 GCA---TCAGAAGCTGTGACCATGGCTGCATAAGAACATGG 622 ||| |||||||||||| |||||||||||||||||||||| Sbjct 652 GCACCATCAGAAGCTGTGCCCATGGCTGCATAAGAACATGG 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30642829670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5