BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929326 Length=2612 Score E Sequences producing significant alignments: (Bits) Value AT3G15354.1 | Symbols: SPA3 | SPA1-related 3 | chr3:5169095-517... 4242 0.0 AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783542-19... 521 1e-146 > AT3G15354.1 | Symbols: SPA3 | SPA1-related 3 | chr3:5169095-5172837 REVERSE LENGTH=3103 Length=3103 Score = 4242 bits (2297), Expect = 0.0 Identities = 2512/2617 (96%), Gaps = 10/2617 (0%) Strand=Plus/Plus Query 1 TAGCTTTTGGTGGATGTTAAATGGAAGGTTCTTCAAATTCTAACTCTAGGGGATTCAATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TAGCTTTTGGTGGATGTTAAATGGAAGGTTCTTCAAATTCTAACTCTAGGGGATTCAATA 397 Query 61 CCTCTGGTGTTTCAGACAGGAACACTGAGTTCTTACCTGTTGAGAGAATCAC-AGCTCGT 119 |||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||| Sbjct 398 CCTCTGGTGTTTCAGATAGGAACACTGAGTTCTTACCTGTTGAGAGACTCACTA-CTCGT 456 Query 120 TCGAAGCCTTCCTCTCATGTTGATGAGTATGTCAGAAGCTTGTTTGGTAGTACTAGTACA 179 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 457 TCCAAGCCTTCCTCTCATGTTGATGAGTATGTCAGAAGCTTGTTTGGTAGTACTAGCACA 516 Query 180 CACAAGTCCGGTGAAGATGATTCTTTAGGGATTGATCCTTTTGTTAGGTCCTTGGAATGG 239 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 517 CACAAGTCTGGTGAAGATGATTCTTTAGGGATTGATCCTTTTGTTAGATCCTTGGAATGG 576 Query 240 GGTGATGTTAGTTTGAGACAGTGGCTGGATAAACCTGAACGATCTGTAGATGTTTTCGAG 299 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 577 GGTGATGTTAGTTTGAGACAGTGGCTGGATAAACCTGAACGATCTGTTGATGTTTTCGAG 636 Query 300 TGCTTGCACGTTTTCAGACAAATCGTTGAGATTGTGAATGCTGCTCACTCTCAAGGCATT 359 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 637 TGCTTGCACGTTTTCAGACAAATTGTTGAGATTGTGAATGCGGCTCACTCTCAAGGCATT 696 Query 360 GTTATTCATAATGTCAGGCCTTCTTGTTTTGTCATGTCTTCGTTTAACCATGTTTCGTTC 419 ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 697 GTTGTTCATAATGTCAGGCCATCATGTTTTGTCATGTCTTCGTTTAACCATGTTTCGTTC 756 Query 420 ATTGAATCCGCTTCTTGTTCGGACTCTGGCTCTGATTCCTTGGAGGATGGTCCAATTAGC 479 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 757 ATTGAATCTGCTTCTTGTTCGGACTCTGGCTCTGATTCCTTGGAGGATGGTCCAATTAGC 816 Query 480 CAGAAGGAAATTGGTAGCTCGAGAAGAGAGGAAACTGTATCGAAAGCTGTTGCGATAGAA 539 ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||| Sbjct 817 CAGAAGGAAATCGGTAGCTCGAGAAGAGAGGAAGCTGTATCGAAAGCTATTGCAATAGAA 876 Query 540 GAGAAAGGAGTCTACAATAAGTTTTTGGAGAGACGAATTGAGAAACTAGAGGAAGAAAAG 599 ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| Sbjct 877 GAGAAAGGAGTCTACAATAAGTTGTTGGAGAGAAAAATCGAGAAACTAGAGGAAGAAAA- 935 Query 600 AA-TCAACCTTTTCCGATGAAACATATATTAGCAATGGAGACAAGTTGGTATACAAGCCC 658 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 936 AACCCAACCTTTTCCGATGAAACATATATTAGCAATGGAGACAAGTTGGTACACAAGCCC 995 Query 659 TGAAGAGGATGTTGATTCTTCAAGTACTTGTGCTTCAGATGTTTATCGCCTTGGCGTTCT 718 |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 996 TGAAGAGGATTTTGGTTCTTCAAGTACTTGTGCTTCAGATGTTTACCGCCTTGGCGTTCT 1055 Query 719 TCTTTTCGAGCTATTTTGCCCTGTACCTTCAAGAGAAGAGAAATCAAGAACTATGTCTAG 778 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1056 TCTTTTCGAGCTATTTTGCCCTGTACCTTCAAGAGAAGAGAAGTCTAGAACTATGTCTAG 1115 Query 779 T-TTAAGACATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTT 837 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1116 TCTT-AGACATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTT 1174 Query 838 TCTGCTTGTGGTTACTGCATCCTGAGCCAAGTTGTCGACCATCAATGAGTGACTTGCTGC 897 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1175 TCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGTGACTTGCTGC 1234 Query 898 AAAGCGAGTTTATAACTGAACCAAGAGATAATTTGGAAGAACGTGAAGCTGCAATCAAGC 957 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| Sbjct 1235 AAAGCGAGTTTATAACTGAACCTAGAGATAATTTGGAAGAACGTGAAGCAGCAATCGAGC 1294 Query 958 TTAGGGACAGAATCGAGGAACAGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGA 1017 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295 TTCGGGACAGAATCGAGGAACAGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGA 1354 Query 1018 GAAAGCAGGAATCTGCGTATAGATTGC-GTGATACGGTTGCACTTCTTTCTTCTGACATT 1076 | ||||| ||||||||||||||||||| | ||||| ||| |||||||||||||||||||| Sbjct 1355 GGAAGCAAGAATCTGCGTATAGATTGCAG-GATACTGTTTCACTTCTTTCTTCTGACATT 1413 Query 1077 GAGCAAGTTGTAAAGAGACAATTAATTTTGAAGAAAAAGGGAAGCTCACTCTCTGATTTC 1136 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1414 GAGCAAGTTGTAAAGAGACAGTTAATTTTGAAGAAAAGGGGAAGCTCACTCTCTGATTTC 1473 Query 1137 AGTAAAGATGATCATCAATATCCCTCTGGTCAGCCAATGATAAGCTTCCAGGCAAACGAG 1196 ||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||| Sbjct 1474 AGTAAAGATGATCATCAATATACCTCTGGTCAGCCATTGATGAGTTTCCAGGCAAACGAG 1533 Query 1197 GAGCCATCAGCATTCTTGGCCTCAAGAAAACGATTTAGACAAGGGA-TCTCGGCATTGGA 1255 |||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| Sbjct 1534 GAGCCATCAGCATTCTTGGCCTCAAGAAAACGGGTTAGACAAGGGATTCT-GGCATTGGA 1592 Query 1256 AGACGATGTTGAAGTTGATGAAGAGAGTCAAGGAAGCACACTTCTTGAAAGCTCCCGGTT 1315 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1593 AAACGGTGTTGAAGTTGATGAAGAGAGTCAAGGAAGCACACTTCTTGAAAGCTCCCGGTT 1652 Query 1316 GATGAGAAACTTCAAGAAACTAGAATCGGTCTACTTTCTGACAAGGCGCAGGCAAATGAA 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1653 GATGAGAAACTTCAAGAAACTAGAATCGGTCTACTTTCTGACAAGGCGCAGGCAAATGAA 1712 Query 1376 GGCTGCTGCTTCAGGGAAATCATTAACTAGACACTCGCCGTTAAGTAGTGAAAATGGAAG 1435 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1713 GGCTGCTGCTTCAGGGAAATCATTAACTAGACATTCGCCGTTAAGTAGTGAAAATGGAAG 1772 Query 1436 AGGTTCAATGATTGTCTCAGAGAAAAGCTCAGTAAGCAACCCCGCCGCACCTAAAGATTT 1495 |||||| |||||||||||||||||||| |||||||||||||| | ||||| |||| ||| Sbjct 1773 AGGTTCTATGATTGTCTCAGAGAAAAGTTCAGTAAGCAACCCGGTGGCACCCAAAGCTTT 1832 Query 1496 CTACAATCATGATTCGAGACAAGGTGGGTGGATAGATCCATTCCTTGAGGGTTTGTGTAG 1555 || |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 1833 CTTCAATAATGACTCGAGACAAGGGGGGTGGATAGATCCTTTCCTTGAGGGTTTGTGCAG 1892 Query 1556 ATATTTATCATTCAGTCAGCTAAGAGTGAAAGCAGATTTGAAACAAGGAGATTTGTTGAA 1615 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1893 ATATTTATCATTCAGTCAGCTAAGAGTGAAAGCTGATTTGAAACAAGGAGATTTGTTGAA 1952 Query 1616 CTCTTCTAACCTCGTTTGCGCCCTTGCTTTTGACCGGGATGGAGAATTATTCGCCACGGC 1675 ||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| || Sbjct 1953 CTCTTCTAACCTCGTTTGCGCTCTTGCGTTTGACCGAGAAGGAGAATTATTCGCCACTGC 2012 Query 1676 GGGTGTCAACAAGAAAATCAAGATATTTGAATGTAATTCCATTGTAAACAATAACCGGGA 1735 ||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||| Sbjct 2013 GGGAGTCAACAAGAAAATCAAGATATTCGAATGTAACTCCATAGTAAACGATAACCGGGA 2072 Query 1736 TATTCACTATCCGGTTGTGGAACTGGCTGGTTGGTCAAAGTTAAGTAGTTTATGTTGGAA 1795 ||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 2073 TATTCACTATCCGGTGGTGGAATTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAA 2132 Query 1796 CAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTGGTTCAGATATGGGA 1855 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2133 CAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGATATGGGA 2192 Query 1856 TGTTGCGAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCAT 1915 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2193 TGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCAT 2252 Query 1916 CGATATATCATCAGCAGACCCGACTTTGCTGGCTAGCGGAAGCGATGATGGAACCGGAGT 1975 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2253 CGATATTTCATCAGCAGACCCGACTTTGCTGGCTAGCGGAAGCGATGATGGAACCGGAGT 2312 Query 1976 TAGCATTGGGACCATTAAGACAAAGGCCAATGTATGCTGTGTCCAGTTTCCATCAGACTC 2035 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2313 TAGCATTGGGACCATCAAGACAAAGGCCAATGTATGCTGTGTCCAGTTTCCATCAGACTC 2372 Query 2036 AGGACGGTCTCTAGCATTTGGTTCTGCAGATCATAAAGTGTATTACTACGATCTCCGAAA 2095 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2373 CGGACGGTCTCTAGCATTTGGTTCTGCAGATCATAAAGTGTATTACTACGATCTTCGAAA 2432 Query 2096 CCCCAAGATTCCTCTTTGCACAATGATTGGTCATAGCAAGACAGTGAGTTATGTCAAGTT 2155 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2433 CCCCAAGATTCCTCTGTGCACAATGATTGGTCATAGCAAGACAGTGAGTTATGTCAAGTT 2492 Query 2156 TGTAGATTCATCCACTCTTGTGTCCTCTTCTACTGATAACACACTGAAGCTTTGGGACTT 2215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2493 TGTAGATTCATCCACTCTTGTGTCCTCTTCTACTGATAACACACTGAAGCTTTGGGACTT 2552 Query 2216 GTCGATGTCTGCTTCTGGGATTAATGAAACCCCTCTTCACTCATTCACTGGGCACACTAA 2275 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 2553 GTCGATGTCTGCTTCTGGGATTAATGAATCCCCTCTTCACTCATTCACTGGACACACTAA 2612 Query 2276 TTTAAAGAACTTTGTTGGCCTATCGGTCTCTGATGGGTATATAGCAACAGGCTCAGAGAC 2335 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2613 TTTAAAGAACTTTGTTGGCTTATCGGTCTCTGATGGGTATATAGCAACAGGCTCAGAGAC 2672 Query 2336 TAACGAGGTTTTCGTGTACCACAAGGCTTTCCCAATGCCAGTGATGTCGTACATGTTCAA 2395 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2673 TAACGAGGTTTTCGTGTACCACAAGGCATTCCCAATGCCAGTGATGTCGTACATGTTCAA 2732 Query 2396 CAACACTGACTCTGTGTCTGGTCTCGAAGTGGACGATGCCTCACAGTTCATATCTTCGAT 2455 ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 2733 CAACACTGACTCTATGTCTGGTCTCGAAGTGGACGATGCATCACAGTTCATATCTTCAAT 2792 Query 2456 CTGCTGGCGAGGACAGTCGTCTACGTTAGTCGCTGCTAACTCCAATGGCAACATCAAAAT 2515 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2793 CTGCTGGCGAGGACAGTCGTCTACGTTAGTCGCTGCTAACTCCAATGGCAACATAAAAAT 2852 Query 2516 TCTGGAGATGATGGCTTGAGCCTCTCACAAATCTCTTGTTCTTCTTCTCCGCAAGAGATC 2575 ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 2853 TCTGGAGATGATGACTTGAGCCTCTCATAGATCTCTTGTTCTTCTTCTCCGCAAGAGATA 2912 Query 2576 TGCTCTGCTGGAGTGATTGATATAGGGTAAACCATTT 2612 ||||||||||||||||||||||||||||||||||||| Sbjct 2913 TGCTCTGCTGGAGTGATTGATATAGGGTAAACCATTT 2949 > AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783542-19786902 FORWARD LENGTH=2690 Length=2690 Score = 521 bits (282), Expect = 1e-146 Identities = 476/566 (84%), Gaps = 27/566 (5%) Strand=Plus/Plus Query 567 GAGAGACGAATTG-AGA-AACTAGAGGAAGAAAAGAATCAACCTTTTCCGATGAAACATA 624 |||||||||| | | | ||| |||||||| |||||| |||||||| || |||||||| | Sbjct 553 GAGAGACGAA--GCAAACAACAAGAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGA 610 Query 625 TATTAGCAATGGAGACAAGTTGGTATACAAGCCCTGAAGAGGATGTTGATTCTTC-AAGT 683 ||||||||||||||| |||||||||||||| | |||||| ||| || ||| || || Sbjct 611 TATTAGCAATGGAGATGAGTTGGTATACAAGTCATGAAGAAGATAATGGTTC-TCTGTGT 669 Query 684 ACTTGTGCTTCAGATGTTTATCGCCTTGGCGTTCTTCT-TTTCGAGCTATTTTGCCCTGT 742 | ||||||||| ||| |||| || ||||| |||||||| ||| |||||||| |||||||| Sbjct 670 AATTGTGCTTCTGATATTTACCGTCTTGGTGTTCTTCTCTTT-GAGCTATTCTGCCCTGT 728 Query 743 AC-CTTCAAGAGAAGAGAAATCAAGAACTATGTCTAGTTTAAGACATCGCGTTCTTCCGC 801 | | |||||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 729 -CTCCTCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCC 787 Query 802 CTCAGATATTGCTCAAATGTCCAAAAGAAGCTTC-TTTCTGCTTGTGGTTACTGCATCCT 860 |||||||||| ||||| || || ||||||||||| ||| ||||||||||||||||||||| Sbjct 788 CTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTT-TGCTTGTGGTTACTGCATCCT 846 Query 861 GAGCCAAGTTGTCGACCATCAATGAGTGACTTGCTGCAAAGCGAGTTTAT-AACTGAACC 919 ||||| || ||||||||||| |||||||| ||||| ||||| |||||||| ||| ||||| Sbjct 847 GAGCCTAGCTGTCGACCATCGATGAGTGAGTTGCTACAAAGTGAGTTTATCAAC-GAACC 905 Query 920 AAGAGATAATTTGGAAGAACGTGAAGCTGCAATCAAGCTTA-GGGACAGAATCGAGGAAC 978 ||||| |||||||||||||||||||||||||| |||| | |||| ||||||||||||| Sbjct 906 TAGAGAGAATTTGGAAGAACGTGAAGCTGCAATGGAGCT-ACGGGATAGAATCGAGGAAC 964 Query 979 AGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGAG-AAAGCAGGAATCTGC-GTA 1036 | |||| ||||||||||||||||| |||||||||||||| ||| || ||| |||| | | Sbjct 965 AAGAGTTATTACTCGAGTTCTTGTTTCTGATTCAACAGAGGAAA-CAAGAAGCTGCAG-A 1022 Query 1037 TAGATTGC-GTGATACGGT-TGCACTTCTTTCTTCTGACATTGAGCAAGTTGTAAAGAGA 1094 | ||||| | ||||| | | | ||||| |||||||| || || ||||| |||||| || Sbjct 1023 CAAATTGCAG-GATACAATAT-CGCTTCTCTCTTCTGATATCGATCAAGTCGTAAAGCGA 1080 Query 1095 CAATTAATTTTGA-AG-AAAAAGGGA 1118 || || |||| | || ||||||||| Sbjct 1081 CAGTTGGTTTT-ACAGCAAAAAGGGA 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 129681547655 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5