BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929332

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15353.1 | Symbols: MT3, ATMT3 | metallothionein 3 | chr3:51...   405    1e-112


> AT3G15353.1 | Symbols: MT3, ATMT3 | metallothionein 3 | chr3:5180667-5181400 
REVERSE LENGTH=443
Length=443

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 240/250 (96%), Gaps = 2/250 (1%)
 Strand=Plus/Plus

Query  5    TTTTCAAAAACTCAATCATGTCAAGCAACTGCGGAAGCTGCGACTGTGCTGACAAGACCC  64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   TTTTCAAAAACTCAATCATGTCAAGCAACTGCGGAAGCTGCGACTGTGCTGACAAGACCC  118

Query  65   AGTGCGTGAAGAAGGGAACCAGCTACACCTTCGACATCGTCAAGACTCAGGAGAGCTACA  124
            ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  119  AGTGCGTAAAGAAGGGAACCAGCTACACCTTCGACATCGTCGAGACTCAGGAGAGCTACA  178

Query  125  AGGAGGCCATGATCATGGACGTTGGTGCAGAGGAGAACGACGCGAATTGCAACTGCAAGT  184
            |||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||
Sbjct  179  AGGAGGCCATGATCATGGACGTTGGTGCCGAGGAGAACAACGCAAATTGCAAGTGCAAGT  238

Query  185  GCGGCTCCACTTGCAGCTGCGTCAACTGCACTTGCTGCCCCAACTAAA-AATGCTTCTTT  243
            |||||||| ||||||||||||||||||||||||||||||||||||||  || ||||||||
Sbjct  239  GCGGCTCCTCTTGCAGCTGCGTCAACTGCACTTGCTGCCCCAACTAATGAA-GCTTCTTT  297

Query  244  AATCAAAATG  253
            ||||||||||
Sbjct  298  AATCAAAATG  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5