BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929337 Length=622 Score E Sequences producing significant alignments: (Bits) Value AT3G15360.1 | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type... 898 0.0 > AT3G15360.1 | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188374-5189697 FORWARD LENGTH=896 Length=896 Score = 898 bits (486), Expect = 0.0 Identities = 584/630 (93%), Gaps = 11/630 (2%) Strand=Plus/Plus Query 1 AAAAGAATTTCTCTGCTC--CTTCAATGGCGTCGTTGCTCGATTCCGTCACCGTGACCCG 58 |||| ||| ||||||||| || ||||||||||||| ||||||||||||||||||||||| Sbjct 50 AAAAAAATATCTCTGCTCTGCTCCAATGGCGTCGTTACTCGATTCCGTCACCGTGACCCG 109 Query 59 CGTGTTTTCTCTCCCGATTGCGGCTTCGATTTCATCTACTTCAGCTGGTCCGTCGGTTTC 118 |||||||||||| ||||||||||||||| | || ||| ||||||||| |||||||||||| Sbjct 110 CGTGTTTTCTCTGCCGATTGCGGCTTCGGTCTCGTCTTCTTCAGCTGCTCCGTCGGTTTC 169 Query 119 AGGACGCCGGATTTC-CCCAGTCAGGTTTCTGGAATTCAGAGGTTTGAAATGTTCGCGGA 177 | ||||||||||||| ||| | ||||||||||||||||||||||||||| | |||||||| Sbjct 170 ACGACGCCGGATTTCTCCC-GCCAGGTTTCTGGAATTCAGAGGTTTGAAGTCTTCGCGGA 228 Query 178 GTTTGGTGACTCAGTCAGCGAGTGTTGGTGCGAATCGTAGATCCAG-AGCTGCTCGCGGT 236 |||||||||||||||| || ||| | ||||||||||||||| |||| | | ||||||||| Sbjct 229 GTTTGGTGACTCAGTCGGCCAGTCTGGGTGCGAATCGTAGAACCAGAATC-GCTCGCGGT 287 Query 237 GGAAGAATCGCCTGTGAGGCTCAGGACACCACT---GCTGCCGTCGAAGTACCAAACCTG 293 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 288 GGACGAATCGCCTGTGAGGCTCAGGACACCACTGCCGCCGCCGTCGAAGTACCAAATCTG 347 Query 294 TCTGATTCAGAATGGCAAACACAGGTTCTGGAATCAGATGTCCCAGTAT-TGGTCGAGTT 352 ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 348 TCTGATTCAGAATGGCAAACAAAGGTTCTGGAATCAGATGTCCCAGT-TCTGGTCGAGTT 406 Query 353 CTGGGCACCATGGTGTGGACCATGCCGTATGATTCACCCCATAGTTGACCAACTGGCCAA 412 ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 407 CTGGGCACCATGGTGTGGACCTTGCCGTATGATTCACCCCATAGTTGACCAGCTAGCCAA 466 Query 413 AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACCGACGAGAGCCCAAACACAGC 472 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 467 AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACTGACGAGAGCCCAAATACAGC 526 Query 473 AAACCGTTACGGGATACGCAGCGTTCCAACAGTAATCATCTTCAAAGACGGTGAGAAGAA 532 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 527 AAACCGTTACGGGATACGAAGCGTTCCAACAGTAATCATCTTCAAAGGCGGTGAGAAGAA 586 Query 533 AGATAGTATCATTGGAGCTGTCCCTAGAGAGACATTGGAGAAAACTATAGAAAGATTCTT 592 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 587 AGATAGCATCATTGGAGCTGTGCCTAGAGAGACGTTGGAGAAAACTATAGAAAGATTCTT 646 Query 593 GGTCGAGTAACAAAATTTGACTCGTTTGTC 622 ||||||||||||||||||||||| |||||| Sbjct 647 GGTCGAGTAACAAAATTTGACTCTTTTGTC 676 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29989785759 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5