BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929358
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15520.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 2165 0.0
> AT3G15520.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:5249599-5252506 REVERSE
LENGTH=1615
Length=1615
Score = 2165 bits (1172), Expect = 0.0
Identities = 1346/1429 (94%), Gaps = 15/1429 (1%)
Strand=Plus/Plus
Query 1 AACTTGCAAGCTTCACATCAATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 AACTTGCAAGCTTCCCATCAATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACC 114
Query 61 GGATTTTCTTTCTCCACCCTTCACCTCTCAATCGTAAATTCCTCTTCGTAAAACCCAAAT 120
| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 115 GCCTTTTTTTTCTCCATCCTTCACCTCTCAATCGCAAATTCCTCTTCGTAAAACCCAAAT 174
Query 121 TACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGC-AATGC--TCT--A---AG-- 170
||||||||||||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 175 TACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGCGTCTGCATTCTACATCCAGTA 234
Query 171 --ATTGGCACCAAGGAACATATACATTCCTGCAATTCTTCAATTGATTCAAAGTTGAACC 228
| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 235 AAACTGGCACTAAGGAACTTATACATTCCTGCAATTCTTCAATTGATTCGAAGTTGAACA 294
Query 229 CTTTTGAAGATGGATTTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTC 288
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTTTTGAAGCTGGATCTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTC 354
Query 289 AAGTTTGGTCTCCATTGCCCTTGCTTGGTCTAGACGCTGCTTACATTTCACCTGCAGAGG 348
|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 355 AAGTATGGTCTCCATTGCCCTTGTTTGGTCTAGACTCTGCTTACATTTCACCTGCAGAGG 414
Query 349 CAGTTCTTTACTCTCCGGACACGAAAGTTCCAAGAACTGGCGAACTTGCTCTAAGGAGGG 408
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 415 CAGTTCTTTACTCTCCGGACACTAAAGTTCCAAGAACTGGAGAACTTGCTCTAAGAAGGG 474
Query 409 CTATTCCTGCTAATCCAAGCATGAAGATAATACAGGCTTCATTGGAAGATATATCATATC 468
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 475 CTATACCTGCTAATCCAAGCATGAAGATAATACAGGCTTCGTTGGAAGATATATCATATC 534
Query 469 TTCTCAGAATTCCTCAAAGAAAGCCTTATGGTACCATGGAGAGCAATGTAAAGAAAGCTC 528
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 535 TTCTCAGAATTCCTCAAAGGAAGCCTTACGGTACCATGGAGAGCAATGTAAAGAAAGCTT 594
Query 529 TAAAGGTGGCTATAGACGATAAGGATAAGATATTGGCTAGTATACCAGCAGACTTAAAAG 588
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 595 TAAAGGTGGCTATAGATGATAAGGATAAGATCTTGGCTAGTATACCAGTAGACTTAAAAG 654
Query 589 ACAAGGGCTCAGAACTGTATGCAACTCTGATTGATGGCAAGGGTGGCCTTCAAGCACTTA 648
|||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||
Sbjct 655 ACAAGGGCTCAGAACTGTATACAACTCTGATTGATGGAAAGGGTGGACTACAAGCACTTA 714
Query 649 TAACATCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGCCTGGCAGCATCACTAG 708
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 715 TAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAG 774
Query 709 ATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTTTACTTCCTCAGC 768
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 ATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTCTACTTCCTCAGC 834
Query 769 AATACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAG 828
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGTACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAG 894
Query 829 GTGATGGTTCAACATTTTCAGCTGCAGCTGGGGGTGATCAAAGAAAGAGTGCTACAATCC 888
||||||||| || |||||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 895 CTGATGGTTCGACTTTTTCAGCTGAAGCTGGAGGTGATCAAAGAAAGAGTGCTACAGTAC 954
Query 889 AGATCGTTATAGATGGATATTCAGCACCTCTAACAGCAGGGAATTTTGCAAAACTGGTAA 948
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 955 AGATCGTTATAGATGGATATTCAGCACCTCTAACCGCAGGGAATTTTGCAAAACTGGTAA 1014
Query 949 CTAGCGGTGCATATGATGGAGCCAAACTCAATACAGTGAACCAGGCTGTTATCACAGAGG 1008
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1015 CTAGCGGTGCATATGATGGAGCCAAACTCAATACTGTAAACCAGGCTGTTATCACAGAGG 1074
Query 1009 ATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAGT 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1075 ATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAAT 1134
Query 1069 TCGAACCTCTCTACCGAACCCCATTGAGTGTCCAGGATGGGGAGTTACCAGTTCTTCCTT 1128
|||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1135 TCGAACCTCTCTACAGAACGCCATTGAGTGTCCAGGATGGGGAGTTACCAGTGCTTCCTT 1194
Query 1129 TATCGGTTTATGGAGCTGTTGCAATGGCGCACAGTGAAACCTCAGATGAATACTCTTCTC 1188
||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct 1195 TATCGGTTTATGGAGCTGTAGCAATGGCGCACAGCGAAAACTCAGAAGAATACTCTTCTC 1254
Query 1189 CTTACCAATTCTTCTTCTACCTATACGATAAAAGAAATTCTGGCTTGGGAGGTTTATCCT 1248
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1255 CTTACCAATTCTTCTTCTACCTATACGATAAAAGAAACTCTGGCTTAGGAGGATTATCCT 1314
Query 1249 TTGACGAAGGGCAGTTCTCGGTTTTTGGATACACAACAGCAGGAAAAGATATTCTTGGGC 1308
|||||||||| ||||||||||| || |||||||||| |||||||||||||||||| ||||
Sbjct 1315 TTGACGAAGGACAGTTCTCGGTCTTCGGATACACAATAGCAGGAAAAGATATTCTCGGGC 1374
Query 1309 AGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGATCGCCTTA 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1375 AGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGACCGCCTTA 1434
Query 1369 TTTTGCCTGCTCAAAACAACTACAACATCAACTCATCCACTTGATTCTT 1417
|||||||| |||||||||| | | ||||||| |||||||||||||||
Sbjct 1435 GTTTGCCTGTTCAAAACAAC-A-A-CATCAACGAATCCACTTGATTCTT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5