BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929366 Length=1396 Score E Sequences producing significant alignments: (Bits) Value AT3G15570.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2130 0.0 > AT3G15570.1 | Symbols: | Phototropic-responsive NPH3 family protein | chr3:5269849-5271922 REVERSE LENGTH=1999 Length=1999 Score = 2130 bits (1153), Expect = 0.0 Identities = 1323/1405 (94%), Gaps = 12/1405 (1%) Strand=Plus/Plus Query 1 TGTGAA-CAAAAAACTCGAAACAAATGAAGAAAACACCTTCGCCGGAACCAGTCACCATC 59 |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 199 TGTGAAGAAAAAAACTCGAAACAAATGAAGAAAACACTTTCGCCGGAACCCGTCACCATC 258 Query 60 TACGGCAATCAG-CAAGAAACCTTCGTCGGAGATATGGAGTACTACACTTACTTCGACGA 118 |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 259 TACGGCAATC-GCCAAGAAACCTTCGTCGGTGATATGGAGTACTACACTTACTTCGACGA 317 Query 119 ATCTTGTATCCATGACATGAACTATTTCGTCAAAACAATCACCGGAATCAAATCCAAAGG 178 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 318 ATCTTGTATCCAAGACATGAACTATTTCGTCAAAACAATCACCGGCATCAAATCCAAAGG 377 Query 179 AATCCGACCAGACCTCATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 238 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 AATCAGACCAGACCTTATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 437 Query 239 TCTCTCCGGCAACGTCTCCGCCATCA-TT--TCCACCTCCGTAGAATCCAAGAACCACCT 295 |||||||||||| ||||||||||| | || ||||||||| |||||||||||||| ||| Sbjct 438 TCTCTCCGGCAATGTCTCCGCCATTATTTCCTCCACCTCCTTAGAATCCAAGAACAACCA 497 Query 296 CAATGACACACAGCCGGAGAGCGTCACGGCGTCTGTTATGAAGAAACGATTTTTCGTCGA 355 ||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 498 CAATGACACACAGCCAGAGAGCGTCACTGCATCTGTAATGAAGAAACGGTTTTTCGTCGA 557 Query 356 AACACTAATCGGAATCCTCCCGCCGGAGAAAGACTCTGTTCCTTGCAATTTCCTTCTCCG 415 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 558 AACACTAATCGGAATCCTCCCACCGGAGAAAGACTCTGTTCCTTGCAATTTCCTCCTCCG 617 Query 416 TCTCCTCAGGGCAGCGAAAATGGTCGGAGCTAATCCGAACTACTTAACGGAGCTTGAAAC 475 |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 618 TCTCCTCAGGACAGCGAAAATGGTCGGAGCTAATCCGAATTATTTAACGGAGCTTGAAAC 677 Query 476 CAGAGTCTCGTGGCAGCTTGACCAAGCCTCTCTCAAGGAGCTTATGATACCTTCTTTCAG 535 |||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 678 CAGAGTATCGTGGCAGCTCGACCAAGCTTCTCTCAAGGAGCTTATGATACCTTCCTTCAG 737 Query 536 CTACACGTCTGGTACTTTGCTTGACGTTGAGCTTGTGACACGTCTCGTGAACAAATTTGC 595 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| | Sbjct 738 CTACACGTCTGGTACTTTGCTTGACATTGAGCTTGTGACGCGTCTCGTGAACAAGTTTTC 797 Query 596 TGGATTGGATAGTGAAGGTGTTAAAACCAG-TGCGGCTCTTGTTAAAGTGGCCAAGCTTG 654 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 798 TGGATTGGATAGTGAAGGTGTTAAAACC-GCTGCGGCTCTTGTTAAAGTGGCCAAGCTTG 856 Query 655 TTGATTCGTACCTCGCTGAAGCAGCCGTTGACGGTGGTTTGGCTTTACCGGAGTTTATAT 714 |||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 857 TTGACTCCTACCTCGCTGAAGCTGCCGTTGACGGTGGTTTAGCTTTACCGGAGTTTATTT 916 Query 715 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGGGCCA 774 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 917 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGAGCCA 976 Query 775 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGCA 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 977 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGTA 1036 Query 835 GGCTTATTGATAGCAGAAAGCTATCACCAGAAGCAGCTCTTCACGCGGCTCAGAATGATC 894 | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1037 GACTTATTGATAGCAGAAAGTTATCACCGGAAGCAGCTCTTCACGCGGCTCAGAATGATC 1096 Query 895 GTTTACCGGTGAGAGCAATCATTAGAGTTTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 954 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1097 GTTTACCGGTGAGAGCAATCATTGGAGTGTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 1156 Query 955 ACATTGACTGGAATGGTAGCTCTATAAGCAGCACGACGAAGAGTCCAACAAACCCTTCTG 1014 |||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||| |||||| Sbjct 1157 ACATTGACTGTAATAGTAGCTCGATAAGCAGCACTACGAGGAGTCCAACAAACGCTTCTG 1216 Query 1015 GTTCACATTACTTGGAGGGAGGTTCTGCAGCGCGGTGCTTGTCTAAACGTGAGATGAATG 1074 ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1217 GTTCACATTACCTCGAGGGAGGTTCTGCAGCGCGGTGTTTGTCTAAACGTGAGATGAATG 1276 Query 1075 TTCAGCAAGCAGAGATAAGAAGGCTTCGAGAAGATGTGGTGAGGCTGCAGAGCCAGTGCA 1134 |||| |||||||||||||||||||| || || |||||||||||||||||||| ||||| Sbjct 1277 TTCAACAAGCAGAGATAAGAAGGCTACGGGAGGATGTGGTGAGGCTGCAGAGTCAGTGTG 1336 Query 1135 GTGCTATGCATTTGCAGGTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGAAGTAAAG 1194 | ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1337 GCGCTATGCATTTCCAGCTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGGAGTAAAG 1396 Query 1195 GGTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGCGTTG 1254 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1397 GTTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGTGTTG 1456 Query 1255 AAAAAGGTGAGGAAGAATCTGGTGA---TGGTGAAGGATTTGAGCCTCGGACTCCTGGGA 1311 |||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| | Sbjct 1457 AAAAGGGCGAGGAAGAATCTGGTGACAATGGTGAAGGATTTGAGCCACGGACTCCTGGTA 1516 Query 1312 ATATGAAGACAAGGCTTGTCAAAGGAAGAACGACACCTTCAAGGTGGAGAAAATCTATGT 1371 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1517 ATATGAAGACAAGGCTTGTCAAAGGAAGAACAACACCTTCAAGGTGGAGAAAATCTATGT 1576 Query 1372 CTTAAATCTTGAATTAATGAAAACA 1396 ||||| ||||||||||||||||||| Sbjct 1577 CTTAA-TCTTGAATTAATGAAAACA 1600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68774746650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5