BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929391 Length=811 Score E Sequences producing significant alignments: (Bits) Value AT3G15790.1 | Symbols: MBD11, ATMBD11 | methyl-CPG-binding doma... 1048 0.0 > AT3G15790.1 | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domain 11 | chr3:5343016-5344700 FORWARD LENGTH=1182 Length=1182 Score = 1048 bits (567), Expect = 0.0 Identities = 747/826 (90%), Gaps = 44/826 (5%) Strand=Plus/Plus Query 1 TTGCTAAA-GGAAAGGGAGAGAGATGGGTGGTGAAGAGGAAGTTGTATCTGTTGAGCTAC 59 |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 82 TTGCTAAAGGGAAA-GGAGAGAGATGGGTGGTGAAGAGGAAGTTGTTTCTGTTGAGCTAC 140 Query 60 CAGCACCTTCTTCATGGAAGAAATTGTTTTACCCGAACAAAGTGGGTTCAGTGAAGAAAA 119 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 141 CAGCACCTTCTTCATGGAAGAAATTGTTTTACCCCAACAAAGTGGGTTCAGTGAAGAAAA 200 Query 120 CAGAGATTGTGTTTGTTGCTCCAACGGGTGAGGAGATCAGTAACAGAAAGCAGCTGGAGC 179 ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 201 CAGAGGTTGTGTTTGTGGCTCCAACGGGTGAGGAGATTAGTAACAGAAAGCAGCTGGAGC 260 Query 180 AGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCTGAGTTTGATTGGACGACTAGTG 239 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 261 AGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCAGAGTTTGATTGGACGACTAGTG 320 Query 240 GGACACCTAGGAGATCTGCAAGAATCAGCGAGAAGACTAAGGCTACGCCGTCACCAGATA 299 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 321 GGACACCTAGGAGATCTGCAAGAATCAGTGAGAAGACTAAGGCTACGCCGTCACCAGATA 380 Query 300 AAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTTCAGGGTCAAAGAAAGATGCAGAAG 359 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 381 AAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTCCAGTGTCAAAGAAAGATGCAGAAG 440 Query 360 GTGAGAAATCAGAGGGAGGAG-AG-G-AAAACTCTCATGTGAAAGATACTGAAATGAATC 416 ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 441 GTGAGAAATCAGAGGGAGGAGGAGAGGAAAACTCTCATGTGAAAGATACTGAAATGAATC 500 Query 417 CTCCAGAGGGAAACGTC-A-A-T-AA--TG--A--GA-A----TGGCTCTGGTGAAACTG 461 |||||||||||| || | | | | || || | || | |||||| |||||||||| Sbjct 501 CTCCAGAGGGAATCGCCGAGAATGAAAATGTGACCGATAAGAATGGCTCCGGTGAAACTG 560 Query 462 GGAAGGTGAATGATGCAAAAGAAAACATGGTTGCAAAGGAAACTCCAAGTGCGACTCCAG 521 || |||||||||||||||||||||||| ||||| |||||||||||| |||| |||||| Sbjct 561 AGAGGGTGAATGATGCAAAAGAAAACATTGTTGCTGAGGAAACTCCAAATGCGGCTCCAG 620 Query 522 TTCAAGAAGCGGGTGACCGTGAGTCGGTGAAGGAGAAAGGCTC-GGATTCAGTTGAAGAT 580 ||||||||| |||||| || || |||||||||||| ||| |||||| ||||| ||| Sbjct 621 TTCAAGAAGAGGGTGA--GT----CGATGAAGGAGAAAG-CTCTGGATTCTGTTGATGAT 673 Query 581 AGTAGTAAGGAGAGAGTGGAGTCTCAGACTGACAAAGAAAAAGAGACTGGCTCAATCGAA 640 | || | | | || | || | |||||||||||||||| ||||||||||||||| Sbjct 674 A--AG-A-GTA-AG-G---AG----A--CTGACAAAGAAAAAGATACTGGCTCAATCGAA 718 Query 641 AAGAACTCGGTAGATACAGAGAAGAAGACCGTTGAAGCTAGTGATGAGCAGAAGAATTCT 700 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 719 AAGAACTCGGTAGATGTAGAGAAGAAGACCGTTGAAGCTAGTGATGAGAAGAAGAATTCT 778 Query 701 GAAGCTGCGACCAGAAACCATGAGGAAAATGGTCTGACAACAGAAGCTGAGGGGAAAGAG 760 ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 779 GAAGCTGAGACCAGAAACCATGAAGAAAATGGTCTGACCACAGAAGCTGAGGGGAAAGAG 838 Query 761 AAAACCGCAGAAGCAGAAGCTACCGAATAGCCCTGCTCTGCTTCTG 806 ||||| ||||||| ||||||||||| ||||||||| |||||| ||| Sbjct 839 AAAACAGCAGAAGGAGAAGCTACCGGATAGCCCTGTTCTGCT-CTG 883 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39484039542 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5