BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929393
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15810.1 | Symbols: | Protein of unknown function (DUF567) ... 1295 0.0
> AT3G15810.1 | Symbols: | Protein of unknown function (DUF567)
| chr3:5347822-5349288 REVERSE LENGTH=1005
Length=1005
Score = 1295 bits (701), Expect = 0.0
Identities = 791/832 (95%), Gaps = 15/832 (2%)
Strand=Plus/Plus
Query 2 aagaaaataaaaagaaaaaatggaattagttgaagagaccattccaaaagaagggaaaaa 61
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 AAGAAAATAAAAA-TAAAAATGGAATTAGTTGAAGAGACCATTCCAAAAGAAGGGAAAAA 151
Query 62 gatgggagaaagaATTGTGGTGGACAAAGCTTATCTCTACCAAGAAGACAAACCACTCAC 121
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 152 GATGGGAGAAAGAATTGTGGTCGACAAAGCTTATCTTTACCAAGAAGACAAACCACTCAC 211
Query 122 CGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGTTTCGCCGCCTATGATTGCAACGG 181
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 212 CGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGCTTCGCCGCCTATGACTGCCGTGG 271
Query 182 TGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGT 331
Query 242 CCTCATGGACGCTACCGGAAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACA 301
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CCTCATGGACGCGACCGGGAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACA 391
Query 302 CCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGGTCTTCAGCGT 361
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 392 CCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGATATTCAGCGT 451
Query 362 TCGGAGATCTTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGG 421
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 CCGTAGATCGTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGG 511
Query 422 AGAAGAGTACATTATTGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGGA 481
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 512 AGAAGAGTACATTATCGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGAA 571
Query 482 TAAACGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGG 541
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GAAATGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGG 631
Query 542 TCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCTATGGGTTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 632 TCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCGATGGGTTT 691
Query 602 GGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCGGTTGAGATTGGTGATGAACAGGT 661
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 692 GGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCAGTTGAGATTGGTGATGAACAGGT 751
Query 662 ACACCCTTTTGTAGAGGATTAAT--C--TC-C-C----ACCTCTCACAATGGTCTTCACG 711
||||||||||||||||||||| | | || | | ||||||| || ||||||||||
Sbjct 752 ACACCCTTTTGTAGAGGATTAGTGTCGGTCTCTCTCTCACCTCTCTCAGCGGTCTTCACG 811
Query 712 TTAACATATCGAATCTAATCTTTAGTTTTTCAATCTTTGGATTTGGACCATATG--ATTA 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 812 TTAACATATCGAATCTAATCTTTAGTTTTTCAATCTTTGGATTTGGACCATATGGGATTA 871
Query 770 TGG-GAGTCTGTTTGTATCATTCTGTGTTAAATCATTTAAGTTGCTACGTTA 820
||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 872 TGGAGA-TCTGTTTGTATCATTCTGTGTTAAGTCATTTAAGTTGCTACGTTA 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5