BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929397
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15840.1 | Symbols: PIFI | post-illumination chlorophyll flu... 1358 0.0
> AT3G15840.1 | Symbols: PIFI | post-illumination chlorophyll fluorescence
increase | chr3:5356638-5358500 REVERSE LENGTH=1033
Length=1033
Score = 1358 bits (735), Expect = 0.0
Identities = 832/879 (95%), Gaps = 6/879 (1%)
Strand=Plus/Plus
Query 2 TTCTCATCAGAACGGT-TCCCATGGCTGCTGCCGCTAATACCGCCGCCATTTTCGCCTCT 60
||||||| ||| |||| | | ||||||||||||||||||||| ||||| |||||||||||
Sbjct 63 TTCTCATTAGATCGGTAT-CGATGGCTGCTGCCGCTAATACCTCCGCCGTTTTCGCCTCT 121
Query 61 CCTTCGCAGCCTTTATCCTCTAAACGGAGTTTTTTGTATAGTTCAACGATTGGTCCAATA 120
|| ||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||
Sbjct 122 CCGTCGCAGCCTTTATCCTCGAAACGTAGTTTTTTGTACAGTTCAAGGATTGGTCCAATA 181
Query 121 CTTAGGAGATTTCCAAGGAAGAAACTTGTTCTCCAAGTTAAAGCTGTTGCCACGACTCTT 180
|| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 182 CTAAGGAGATTTCCGAGGAAGAAACTTGATCTCCAAGTTAAAGCTGTTGCCACGACTCTT 241
Query 181 GCACCTCTCGAAGAGATCAAAGAATATAAGCTTCCTTCATGGGCCATGTTCGAGATGGGT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 242 GCACCTCTCGAAGAGATCAAAGAATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGT 301
Query 241 ACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCTCCAA-CTGCAGGTGAGAAGTT 299
|||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||
Sbjct 302 ACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCT-CAGGTGAAAAGTT 360
Query 300 GAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACACTTAACGAGGACTATGGGGTTGC 359
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 361 GAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGC 420
Query 360 ATTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAA 480
Query 420 GAAGGATCGAGGCAAAGCCGATTCTCCAATTTACACCATGCAGATTTGCATTCCAAAGCA 479
||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 481 GAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCA 540
Query 480 TGCTGTGAATTTGATATTCTCGTTCACCAACGGTATTGACTGGGATGGTCCATACAGACT 539
||||||||||||||||||||| ||||| || ||| | || ||||| ||||||||||||||
Sbjct 541 TGCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACT 600
Query 540 TCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCT 660
Query 600 AGCGAATGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGT 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGT 720
Query 660 TGTTGCAACTCGTTGCACAATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAA 719
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTTCCAACTCGTTGCACGATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAA 780
Query 720 TTTGGATCTAGTTCCTGGGTGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAA 779
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTGGATCTAGTTCCTGGATGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAA 840
Query 780 TGTTGATGATGGCTCTTGTCCACTCGATTTATCCGATTCTGATGAATAGAGCTAGATTTT 839
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||
Sbjct 841 TGTTGATGATGGCTCTTGTCCCCTCGAGTTATCCGATTCTGATGAATAGAACTA-ATTTT 899
Query 840 -ATTTATGTAAATATATAAACACATGTGTTAATATCAGT 877
||||||||||||||||| |||||| |||||||||||||
Sbjct 900 TATTTATGTAAATATATATACACATATGTTAATATCAGT 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42950195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5