BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929433
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16180.1 | Symbols: | Major facilitator superfamily protein... 2833 0.0
AT1G52190.1 | Symbols: | Major facilitator superfamily protein... 1212 0.0
> AT3G16180.1 | Symbols: | Major facilitator superfamily protein
| chr3:5481325-5485094 REVERSE LENGTH=2079
Length=2079
Score = 2833 bits (1534), Expect = 0.0
Identities = 1729/1823 (95%), Gaps = 14/1823 (1%)
Strand=Plus/Plus
Query 2 GAAGC-AGAAAGGTAACAACAATGGAGAACCCTCCGGATCAAACAGAGTCAAAGGAGATT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 131 GAAGCTTGAAAGGTAACAACAATGGAGAACCCTCCGGATCAAACAGAGTCAAAGGAGACT 190
Query 61 CTTCAACAACAACCCATTAGAAGAAGAAGAACAAAGGGTGGTCTTCTCACTATGCCCTTC 120
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CTT---CAACAACCCATTACAAGAAGAAGAACAAAGGGTGGTCTTCTCACTATGCCCTTC 247
Query 121 ATCATTGCAAACGAGGGGTTCGAGAAAGTGGCGAGCTATGGATTGTTACAGAACATGATT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 248 ATCATTGCAAACGAGGGGTTCGAGAAAGTGGCGAGCTATGGATTATTACAGAACATGATT 307
Query 181 CTTTATCTGATGAGTGATTACAGATTGGGACTTGTTAAAGGACAAACTGTCTTGTTCATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTTTATCTGATGAGTGATTACAGATTGGGACTTGTTAAAGGACAAACTGTCTTGTTCATG 367
Query 241 TGGGTTGCTGCTACTAATTTCATGCCTCTCGTTGGAGCTTTTCTCTCAGATTCATATTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGGGTTGCTGCTACTAATTTCATGCCTCTCGTTGGAGCTTTTCTCTCAGATTCATATTTG 427
Query 301 GGTCGCTTTCTCACCATTGCCATTGCTTCTCTCTCCAGTCTCCTGGGCATGGTGGTTCTA 360
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 428 GGTCGCTTTCTCACCATTGTCATTGCTTCTCTCTCCAGTCTCCTGGGGATGGTGGTTCTA 487
Query 361 TGGCTAACGGCGATGTTACCGCAAGTGAAGCCATCACCGTGTGTAGCAACAGCCGGAACC 420
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 488 TGGCTAACGGCGATGTTGCCGCAAGTAAAACCATCACCGTGTGTAGCAACAGCCGGAACC 547
Query 421 AGTTGCAGTTCCACGACATCTTCCCAATTGGCTCTTTTGTATTCCGCATTCGCACTTA-T 479
| ||||||||| |||||||||| ||||||||||| |||||| ||||||||||| ||| |
Sbjct 548 AACTGCAGTTCCGCGACATCTTCTCAATTGGCTCTCTTGTATACCGCATTCGCA-TTAAT 606
Query 480 ATCGATTGGATCAGGCGGAATCAGGCCATGTTCTTTAGCCTTTGGTGCTGATCAATTGGA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATCGATTGGATCAGGAGGAATCAGGCCATGTTCTTTAGCCTTTGGTGCTGATCAATTGGA 666
Query 540 CAACAAAGAGAATCCTAAGAACGAGAGAGTTCTTGAGAGCTTCTTCGGATGGTACTACGC 599
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 667 CAACAAAGAGAATCCTAAGAACGAGAGAGTTCTTGAGAGTTTCTTTGGTTGGTACTACGC 726
Query 600 TTCTTCATCGGTAGCTGTCTTGATTGCTTTCACTGTCATTGTTTACATTCAAGATCATCT 659
||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 727 TTCTTCATCAGTTGCTGTCTTGATCGCTTTCACCGTCATTGTTTACATTCAAGATCATCT 786
Query 660 AGGATGGAAAATCGGGTTTGGAATCCCCGCCATTCTCATGCTGTTCGCTGGTTTCTTGTT 719
|||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||
Sbjct 787 AGGATGGAAAATCGGGTTTGGAATACCCGCGATTCTCATGCTGCTCGCGGGTTTCTTGTT 846
Query 720 TGTTTTGGCCTCTCCTCTCTACGTTAAACGCAATGTGAGCAAGAGTCTGTTCACTGGTTT 779
|||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 847 TGTTTTCGCGTCTCCTCTCTACGTTAAGCGCGATGTGAGCAAGAGTCTGTTCACTGGTTT 906
Query 780 AGCTCAAGTGGTTGCTGCAGCTTACGTGAACCGGAACTTAACTTTACCGGATCCTCATGA 839
|||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||
Sbjct 907 AGCTCAAGTGGTTGCTGCAGCTTACGTGAAGAGAAACTTAACTTTGCCGGATCATCATGA 966
Query 840 CTCCAGAGATTGTTATTATCGTTTGAAAGATTCTGAACTCAAAGCTCCAAGTGACAAATT 899
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CTCCAGAGATTGTTATTACCGTTTGAAAGATTCTGAACTCAAAGCTCCAAGTGACAAATT 1026
Query 900 GAGGTTTCTAAACAAAGCTTGTGCCATAAGCAACCGCGATGAAGACCTTGGTTCTGATGG 959
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1027 GAGGTTTTTAAACAAAGCTTGTGCCATAAGTAACCGCGATGAAGACCTTGGTTCTGATGG 1086
Query 960 CTTGGCCTTAAACCCA-TGGAGGCTCTGCACAACAGACCAAGTCGAGGAACTCAAGGCCT 1018
||||||||||||| | |||||||| |||||||| |||||||| ||| |||||||||| |
Sbjct 1087 TTTGGCCTTAAACC-AGTGGAGGCTATGCACAACGGACCAAGTTGAGAAACTCAAGGCGT 1145
Query 1019 TGGTAAAAGTGATACCGGTATGGTCCACGGGGATAATGATGTCCATAAACGTTAGCCAGA 1078
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1146 TGGTCAAGGTGATACCGGTATGGTCCACGGGGATAATGATGTCGATAAACGTTAGCCAGA 1205
Query 1079 ACTCGTTTCAGTTGCTTCAAGCTAAATCGATGGACAGACGTTTGAGCAGCGATTCGAGCT 1138
|||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||
Sbjct 1206 ACTCTTTTCAGTTGCTTCAAGCTAAATCAATGGACAGACGTTTAAGCAGCAATTCGACCT 1265
Query 1139 TCCAAATCCCTGCTGGATCGTTCGGTATGTTCACAATCATAGCCTTAATCTCATGGGTCG 1198
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1266 TCCAAATCCCAGCTGGATCGTTTGGTATGTTCACAATCATAGCCTTAATCTCATGGGTTG 1325
Query 1199 TTCTGTACGACCGCGCAATCCTCCCTTTAGCTTCAAAAATCCGAGGCAGACCGGTTAGGG 1258
||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1326 TTCTGTACGACCGCGCAATTCTCCCTTTAGCTTCAAAGATCCGAGGCAGACCAGTTAGAG 1385
Query 1259 TCAATGTCAAGATTCGAATGGGATTAGGGCTATTCATATCATTCTTAGCAATGGCGGTTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TCAATGTCAAGATTCGAATGGGATTAGGGCTATTCATATCATTCTTAGCAATGGCGGTTT 1445
Query 1319 CCGCAACTGTTGAGCATTACAGAAGGAAAACTGCGATAAGCCAAGGACTCGCAAACGATG 1378
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1446 CCGCAACTGTTGAACATTACAGAAGGAAAACCGCGATAAGCCAAGGACTCGCAAACGATG 1505
Query 1379 CCAACTCAACAGTGAACATCTCAGCAATGTGGCTTGTACCGCAGTATGTACTACACGGTT 1438
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1506 CCAACTCAACAGTGAGCATCTCAGCAATGTGGCTTGTACCACAGTATGTACTACACGGTT 1565
Query 1439 TAGCAGAGGCCTTAACCGGGATAGGACAGACCGAGTTTTTCTACACCGAGTTTCCTAAAA 1498
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1566 TAGCAGAGGCCTTGACCGGGATAGGACAGACCGAGTTTTTCTATACCGAGTTTCCTAAAA 1625
Query 1499 GCATGTCGAGTATCGCTGCTTC-TCTGTTTGGTCTAGGAATGGCAGTGGCTAATATATTG 1557
|||||||||||||||| ||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 1626 GCATGTCGAGTATCGCAGCTTCGT-TGTTCGGTCTAGGAATGGCAGTGGCTAATATCTTG 1684
Query 1558 GCTAGTGTGATCCTAAATGCTGTCAAGAATAGCTCAAAGAAGGGCAACGTAAGCTGGATT 1617
|||||||||||||||||||| || ||||||||||||||| ||||||| || |||||||||
Sbjct 1685 GCTAGTGTGATCCTAAATGCGGTAAAGAATAGCTCAAAGCAGGGCAATGTGAGCTGGATT 1744
Query 1618 GAAGATAATATCAACAAGGGTCACTACGACTATTACTATTGGATTTTAGCGATCTTGAGC 1677
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1745 GAAGATAACATCAACAAGGGTCACTATGACTATTACTATTGGGTTTTAGCGATCTTGAGC 1804
Query 1678 TTCGTTAATGTCATCTACTACGTTGTGTGTAGCTGGTCTTATGGTCCTACGGTGGATCAG 1737
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1805 TTCGTTAATGTCATCTACTACGTTGTGTGTAGCTGGTCCTATGGTCCTACGGTGGATCAG 1864
Query 1738 GTGAGGAATGATAAGGTTAATGGTATGAGAGAAGAAGAAGAGGAAGTTATTAAAATATTA 1797
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 1865 GTGAGGAATGATAAGGTTAATGGTATGAGAAAAGAAGAAGAGGAAGTTATTAAA-T-T-A 1921
Query 1798 AACTA-GATCAATTGGTTGATCA 1819
||||| || ||||||||||||||
Sbjct 1922 AACTAAGACCAATTGGTTGATCA 1944
> AT1G52190.1 | Symbols: | Major facilitator superfamily protein
| chr1:19434509-19438971 FORWARD LENGTH=2284
Length=2284
Score = 1212 bits (656), Expect = 0.0
Identities = 1385/1731 (80%), Gaps = 73/1731 (4%)
Strand=Plus/Plus
Query 90 AACAAAGGGTGGTCTTC-TCACTATGCCCTTCATCATTGCAAACGAGGGGTTCGAGAAAG 148
|||||||||||| || |||||||||| || ||||| || ||||||| ||| |||||||
Sbjct 222 AACAAAGGGTGG-AATCATCACTATGCCTTTTATCATAGCTAACGAGGCGTTTGAGAAAG 280
Query 149 TGGCGAGCTATGGATTGTTA-CAGAACATGATTCTTTATC-TGATGAGTGATTACAGATT 206
||||||| |||||||| || || ||||||||| | || | | || || ||||| |||||
Sbjct 281 TGGCGAGTTATGGATTACTACCA-AACATGATTATGTA-CTTAATCAGAGATTATAGATT 338
Query 207 GGGACTTGTTAAAGG-ACAAACTGT-CTTGTTCATGTGGGT-TGCTGCTA-CTAATTTCA 262
||| | | ||||| ||||| ||| ||| ||||||| ||| |||||| | | |||||||
Sbjct 339 TGGAGTAGCAAAAGGAACAAA-TGTGCTT-TTCATGT-GGTCTGCTGC-ATCAAATTTCA 394
Query 263 -TGCCTCTCGTT-GGAGCTTTTCTCTCAGATTCATAT-TTGGGTCGCTTTCTCACCAT-T 318
| |||||| || || ||||||||||| ||||| ||| || |||||||| |||||||| |
Sbjct 395 CT-CCTCTC-TTGGGTGCTTTTCTCTCTGATTCCTATCTT-GGTCGCTTCCTCACCATCT 451
Query 319 GCCATTGCTTCTCTCTCCAGTCTCCTGGGCATGGTGGTTCTATGGCTAACGGCGATGTTA 378
|||||||||||||||||||| || |||| |||||| || |||||||||| || ||||||
Sbjct 452 -CCATTGCTTCTCTCTCCAGTTTCTTGGGAATGGTGCTTTTATGGCTAACTGCAATGTTA 510
Query 379 CCGCAAGTGAAGCCATCACCGTGTG-TAGCA-A-CAGCCGGAA-CCAGTTGCAGTTCCAC 434
|| |||||||||||||| || || | | || | ||||||||| ||| || | || |
Sbjct 511 CCACAAGTGAAGCCATCGCCTTGCGATCCCACAGCAGCCGGAAGCCA-CTGTGGGTCTTC 569
Query 435 GACATCTTCCCAATTGGCTCTTTTGTATTCCGCATTCGCACTTATATCGATTGGATCAGG 494
||| | || || |||||||||||||||||||||| || ||||||||||| || |||||
Sbjct 570 GACCGCATCTCAGCTGGCTCTTTTGTATTCCGCATTTGCCCTTATATCGATCGGGTCAGG 629
Query 495 CGGAATCAGGCCATGTTCTTTAGCCTTTGGTGCTGATCAATTGGACAACAAAGAGAATCC 554
||| ||||| |||||||| ||||| ||||| ||||||||| | |||||||||||||| ||
Sbjct 630 CGGGATCAGACCATGTTCCTTAGCATTTGGAGCTGATCAACTAGACAACAAAGAGAACCC 689
Query 555 TAAGAACGAGAGAGTTCTTGAGAGCTTCTTCGGATGGTACTACGCTTCTTCATCGGTAGC 614
|| || || |||||||| ||||| ||||| || |||||||||||||| ||| | || ||
Sbjct 690 AAAAAATGAAAGAGTTCTCGAGAGTTTCTTTGGTTGGTACTACGCTTCCTCAGCTGTGGC 749
Query 615 TG-TCTTGATTGCTTTCAC-TGTCATTGTTTACATTCAAGATCATCTAGGATGGAAAATC 672
| || | || || ||||| || ||||| |||||||| || ||||| || |||||||||
Sbjct 750 GGTTC-TCATCGCGTTCACGGGT-ATTGTATACATTCAGGAGCATCTCGGGTGGAAAATC 807
Query 673 GGGTTTGGAATCCCCGCCATTCTCATGCTGTTCGCTGGTTT-CTTGTTTGTT-TTGGCCT 730
||||||||| | || || | |||||| || |||||| ||| | | || || || || |
Sbjct 808 GGGTTTGGAGTACCTGCGGTCCTCATGTTGATCGCTGCTTTGC-TATTCATTCTT-GCGT 865
Query 731 CTCCTCTCTACGTTAAACGCAATGTGAGCAAGAGTCTGTTCACTGGTTTAGCTCAAGTGG 790
|||||||||| |||| ||| ||||| ||||||||| ||||| ||||||||||||| |
Sbjct 866 CTCCTCTCTATGTTACACGTGGTGTGACCAAGAGTCTCTTCACCGGTTTAGCTCAAGCGA 925
Query 791 TTGCTGCAGCTTACGTGAACCGGAA-CTTAACTTTACCGGATCCTCATGACTCCAGAGAT 849
||| |||||||||| ||| |||| | ||| | |||| |||| |||||||||| |||
Sbjct 926 TTGTTGCAGCTTACAAGAAGAGGAAGC-TAAGTCTACCAGATCATCATGACTCCTTTGAT 984
Query 850 TGTTATTATCGTTTGAAAGATTCTGAACTCAAAGCTCCAAGTGACAAA-TTGAGGTTTCT 908
|||||||||| |||||||||||||| |||||||||||||| | ||| ||||||||| |
Sbjct 985 TGTTATTATCACATGAAAGATTCTGAAATCAAAGCTCCAAGTCA-AAAGTTGAGGTTTTT 1043
Query 909 AAACAAAGCTTGTGCCATAAGCAACCGCGATGAAGACCTTGGTTCTGATGGCTTGGCCTT 968
|| ||||||||| ||||| ||||| || || || |||| || ||||| || || ||
Sbjct 1044 GAATAAAGCTTGTTTAATAAGTAACCGTGAGGAGGAGATTGGGTCAGATGGGTTTGCTTT 1103
Query 969 AAACCCATGGAGGCTCTGCACAACAGACCAAGTCGAGGAACTCAAGGCCTTGGTAAAAGT 1028
|| ||||||||||| || ||||||||| |||| ||||| || ||||| ||| | |||||
Sbjct 1104 GAATCCATGGAGGCTATGTACAACAGACAAAGTAGAGGAGCTTAAGGCATTGATCAAAGT 1163
Query 1029 GATACCGGTATGGTCCACGGGGATAATGATGTCCATAAACGTTAGCCAGAA-CTCGTTTC 1087
||||| |||||||||| || |||||||||||||||||| |||||| || |||||||
Sbjct 1164 CATACCCATATGGTCCACAGGTATAATGATGTCCATAAACACTAGCCA-AAGTTCGTTTC 1222
Query 1088 AGTTGCTTCAAGCTAAATCGATGGACAGACGTTTGAGCAG-C--GATTCGAGCTTCCAAA 1144
|||| || ||||| | || |||||||| ||| ||||| | | | ||| ||||| |||
Sbjct 1223 AGTTACTGCAAGCGACTTCCATGGACAGGCGTCTGAGCCGCCATGGTTCAAGCTTTCAAG 1282
Query 1145 TCCCTGCTGGATCGTTCGGTATGTTCACAATCATAGCCT-TAATCTC-ATGGGTCGTTCT 1202
| || |||||||| |||||||||||||||||||||| || | | | | ||||||| ||||
Sbjct 1283 TTCCAGCTGGATCATTCGGTATGTTCACAATCATAG-CTCT-AGCCCTATGGGTCATTCT 1340
Query 1203 GTACGACCGCGCAATCCTCCCTTTAGCTTCAAAAATCCGAGGCAGACCGGTTAGGGTCAA 1262
|| ||||| || | |||| |||||||| || |||||||||||||| |||| | |
Sbjct 1341 ATATGACCGTGCGGTTATCCCATTAGCTTCCAAGATCCGAGGCAGACCTTTTAGACTTAG 1400
Query 1263 TGTCAAGATTCGAATGGGATTAGGGCTATTCATATCATTCTTAGCAATGGCGGTTTCCGC 1322
|| ||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1401 CGTTAAGCTAAGAATGGGATTAGGATTATTCATGTCATTCTTAGCAATGGCAATTTCCGC 1460
Query 1323 AACT-GTTG--AGCATTACAGAAGGAAAACTGCGATAAGCCAAGGACT-CGCAAACGATG 1378
|| | |||| ||| || ||||||||||| || |||||||||||| | |||||| ||
Sbjct 1461 AA-TGGTTGAAAGC-TT-CAGAAGGAAAAAAGCTATAAGCCAAGGA-TATGCAAACAAT- 1515
Query 1379 CCAACTCAACAGT-G-A-ACATCTCAGCAATGTGGCTTGTACCGCAGTATGTACTACACG 1435
||| | | || | | |||||||||||||||||||||| || || ||||| ||||| |
Sbjct 1516 TCAAAT--GCTGTGGTAGACATCTCAGCAATGTGGCTTGTGCCACAATATGTTCTACATG 1573
Query 1436 GTTTAGCAGAGGC-CTTAACCGGGATAGGACAGACCGAGTTTTTCTACACCGAGTTTCCT 1494
||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1574 GTTTAGCAGAGGCTCTT-ACCGCAATAGGACAGACTGAGTTTTTCTACACCGAGTTTCCT 1632
Query 1495 AAAAGCATGTCGAGTATCGCTGCTTCTCTGTTTGGTCTAGGAATGGCAGTGGCTAATATA 1554
||||| ||||| || ||||| |||||||| || ||| |||||||||| ||||||| | ||
Sbjct 1633 AAAAGTATGTCTAGCATCGCGGCTTCTCTCTTCGGTTTAGGAATGGCTGTGGCTAGTCTA 1692
Query 1555 TTGGCTAGTGTGATCCTAAATGCTGTCAA-GAA-TAGCT-CAAAGAAG-GGCAACGTA-A 1609
||||| || ||| |||| ||||| ||||| ||| || || | | ||| || || | | |
Sbjct 1693 TTGGCAAGCGTGGTCCTCAATGCGGTCAATGAACTAACTTCTA-GAAATGGTAAAG-AGA 1750
Query 1610 GCTGGATTGAAGATAATATCAACAAGGGTCACTACGACTATTACTATTGGATTTTAGCGA 1669
| ||| || ||| || || ||||||||||||||| |||||||||||||| | | ||||
Sbjct 1751 GTTGGGTTTCAGACAACATTAACAAGGGTCACTACAACTATTACTATTGGGTACTCGCGA 1810
Query 1670 TCTTGAGCTTCGTTAATGTCATCTACTACGTTG-TGTGTAGCTGGTCTTATGGTCCTACG 1728
| |||||||| | ||||| ||||||||||| | | ||||||||||| ||||||||| |
Sbjct 1811 TAATGAGCTTCATCAATGTGATCTACTACGT-GATATGTAGCTGGTCGTATGGTCCTTTG 1869
Query 1729 GTGGATCAGGTGAGGAATGATAAGGTTAATGGTATGAGAGAAGAAGAAGAG 1779
|| || ||||| ||||||| || |||||||||| ||||||| ||||| |||
Sbjct 1870 GTCGACCAGGTAAGGAATGGTAGGGTTAATGGTGTGAGAGAGGAAGAGGAG 1920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90210379365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5