BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929476
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16500.1 | Symbols: PAP1, IAA26 | phytochrome-associated pro... 1291 0.0
> AT3G16500.1 | Symbols: PAP1, IAA26 | phytochrome-associated protein
1 | chr3:5612500-5614410 REVERSE LENGTH=1313
Length=1313
Score = 1291 bits (699), Expect = 0.0
Identities = 804/853 (94%), Gaps = 14/853 (2%)
Strand=Plus/Plus
Query 1 AAGAAATCTTGTGTTGATCAATGG-AGG--GT------AACAGAGAAATGGGTCCAAAAC 51
||| ||||||| |||||||||||| ||| || ||||||||||| ||||||||||
Sbjct 183 AAGGAATCTTGGGTTGATCAATGGAAGGTTGTCCAAGAAACAGAGAAATCGGTCCAAAAC 242
Query 52 TTCTTGATTTGATTCCCCAAGGACGAAAATGGTACCAAGAAGACAAGAACAACACAGATC 111
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 243 TTCTTGATTTGATTCCACAAGGAAGGAAATGGTACCAAGAAGACAAGAACAACACAGATC 302
Query 112 AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCAGGTGGTGATGAAGAAGATCATTCAG 171
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 303 AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCCGGTGGTGATGAAGAAGATCATTCAG 362
Query 172 CGATCAAGAAGAAGAACATAGAGACAAGAAACATCAAGAAGGAATCAGAAGACAAATCTT 231
| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||
Sbjct 363 CAATCAAGAAGAAGAACACAGAGATAAGAAACATCAAGAAGGAAACAGAAGACAAATCTT 422
Query 232 TCCACTGTTTCAATGGCAATCACTTCTCTTCTTCCAACAAAACCACTTATGTTCCTCACA 291
|||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 423 TCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACA 482
Query 292 TCTCACATAAAAGAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCGGTTCGTTCGTTCA 351
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 483 TCTCACAGAAAAGAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCA 542
Query 352 GAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCTCCTTACATGGAG 411
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 543 GAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCT-C-T-CATGGAG 599
Query 412 GTCAGATCAACAAGAGTGATGAAGGTGAAAAGCAAGTTG-AACCTAAGAAAGAAGGAATG 470
|||| ||||||||||||||||| |||||||| ||||||| |||| ||||| |||||||||
Sbjct 600 GTCAAATCAACAAGAGTGATGATGGTGAAAAACAAGTTGAAACC-AAGAAGGAAGGAATG 658
Query 471 TTTGTCAAGATCAATATGGATGGTGTTCCTATTGGTCGTAAAGTTGATCTCAATGCTTAC 530
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTGTCAAGATCAACATGGATGGTGTTCCTATTGGTCGTAAAGTTGATCTCAATGCTTAC 718
Query 531 AATAGCTACGAACAGCTCTCTTTCGCCGTTGACAAACTCTTCAGAGGTTTACTCGCAGCT 590
|| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 719 AACAGCTACGAACAGCTCTCTTTTGTCGTTGACAAACTCTTCAGAGGTCTACTCGCAGCT 778
Query 591 CAAAGAGATACCTCTGGTGGTGAAGGAGAAGAGAAACCTATAATTGGATTGTTAGATGGG 650
|||||||||| ||||| |||| ||||||||||||||||||| |||||||| |||||||||
Sbjct 779 CAAAGAGATATCTCTGATGGTCAAGGAGAAGAGAAACCTATCATTGGATTATTAGATGGG 838
Query 651 AAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGAT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGAT 898
Query 711 GTTCCATGGCAAATGTTCGTTTCATCGGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAG 770
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 GTTCCATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAG 958
Query 771 ATTTCATCTGCCTTGACATCTGGATGCAGTAAGCAAGAGAAGATGAAGCATTGAAGAGTC 830
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 959 ATTTCATCTGCCTTGACATTTGGATGCAGTAAGCAAGAGAAGATGATGCACTGAAGAGTC 1018
Query 831 TTTTTAGAAACTT 843
|||||||||||||
Sbjct 1019 TTTTTAGAAACTT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5