BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929509
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16770.1 | Symbols: RAP2.3, ATEBP, ERF72, EBP | ethylene-res... 1131 0.0
> AT3G16770.1 | Symbols: RAP2.3, ATEBP, ERF72, EBP | ethylene-responsive
element binding protein | chr3:5705662-5707023 FORWARD
LENGTH=1124
Length=1124
Score = 1131 bits (612), Expect = 0.0
Identities = 733/790 (93%), Gaps = 13/790 (2%)
Strand=Plus/Plus
Query 1 GAAACCCACAGCAACAAACAGAGAAAATGTGTGGCGGTGCTATTATTTCCGATTTTGCCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 97 GAAACCCACAGCAACAAACAGAGAAAATGTGTGGCGGTGCTATTATTTCCGATTATGCCC 156
Query 61 CTCTCGTCACCAAGGCCAAGGGCCGTAAACTCACGGCGGAGGAACTCTGGTCAGAGCTCG 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 157 CTCTCGTCACCAAGGCCAAGGGCCGTAAACTCACGGCTGAGGAACTCTGGTCAGAGCTCG 216
Query 121 ATGCTTCCGCCGCCGACGACTTCTGGGGTTTCTATCCCACCTCCAAACTTCATCCCACCA 180
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 217 ATGCTTCCGCCGCCGACGACTTCTGGGGTTTCTATTCCACCTCCAAACTCCATCCCACCA 276
Query 181 ACCAAGTTAACGTGAAAGAGGAGCCAGCGAAG--G-AGCAGGCAACAGAGCCGGCGACGG 237
||||||||||||||||||||||| ||| |||| | |||||||||||||||||| | |
Sbjct 277 ACCAAGTTAACGTGAAAGAGGAGGCAGTGAAGAAGGAGCAGGCAACAGAGCCGG-G--G- 332
Query 238 AGAAACGGAGGAAGAGAAAGAATGTTTATAGAGGGATACGTAAGCGACCATGGGGAAAAT 297
| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 333 A-AA-CGGAGGAAGAGGAAGAATGTTTATAGAGGGATACGTAAGCGTCCATGGGGAAAAT 390
Query 298 GGGCGGCTGAGATTCGAGATCCACGAAAAGGTGTCAGAGTTTGGCTTGGTACGTTCAACA 357
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 391 GGGCGGCTGAGATTCGAGATCCACGAAAAGGTGTTAGAGTTTGGCTTGGTACGTTCAACA 450
Query 358 CGGCGGAGGAAGCCGCCATGGCTTATGACGTGGCGGCGAAGCAGATCCGTGGTGATAAAG 417
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 451 CGGCGGAGGAAGCTGCCATGGCTTATGATGTTGCGGCCAAGCAGATCCGTGGTGATAAAG 510
Query 418 CCAAGCTCAACTTCCCAGATCTGCATCATCATCCTCCTCCTACTACTTCTACTCCGCCGT 477
||||||||||||||||||||||||| |||| ||||||||||| | || |||||| |||
Sbjct 511 CCAAGCTCAACTTCCCAGATCTGCACCATCCTCCTCCTCCTA--A-TTATACTCCTCCGC 567
Query 478 CGTCACCTTCACGATCAACTGATCAGCCTCCGGCTAAGAAGGTCTGCGTTGCCTCTCAGA 537
||||| | |||||||||| |||||||||||||| |||||||||||||||| ||||||||
Sbjct 568 CGTCATCGCCACGATCAACCGATCAGCCTCCGGCGAAGAAGGTCTGCGTTGTCTCTCAGA 627
Query 538 GCGAGAGCGAGTTAACTCAGCTGAGTTTACCGGTGGAGTGCGTTGGATTCGGAAATGGGG 597
| ||||||||||||| ||||| |||||| ||||||||||| | ||||| ||||||||||
Sbjct 628 GTGAGAGCGAGTTAAGTCAGCCGAGTTTCCCGGTGGAGTGTATAGGATTTGGAAATGGGG 687
Query 598 AAGAGTTTCAGAACCTGAGTTACGGATTTGAACCTGATTACGATCTGAAACAGCAGATAT 657
| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 688 ACGAGTTTCAGAACCTGAGTTACGGATTTGAGCCGGATTATGATCTGAAACAGCAGATAT 747
Query 658 CGAGTTTGGAGTCGTTCCTTGAGCTGGACGGTACCACGGCGGAGCAACCGAGTCAACTCG 717
|||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 748 CGAGCTTGGAATCGTTCCTTGAGCTGGACGGTAACACGGCGGAGCAACCGAGTCAGCTTG 807
Query 718 ATGAGTCCGTCTCCGAGGTGGATATGTGGATGCTTGATGATGTCATCGCGTCGTATGAAT 777
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 808 ATGAGTCCGTTTCCGAGGTGGATATGTGGATGCTTGATGATGTCATTGCGTCGTATGAGT 867
Query 778 aaaa-aaaaa 786
|||| |||||
Sbjct 868 AAAAGAAAAA 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5