BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929724
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18440.1 | Symbols: AtALMT9, ALMT9 | aluminum-activated mala... 2878 0.0
> AT3G18440.1 | Symbols: AtALMT9, ALMT9 | aluminum-activated malate
transporter 9 | chr3:6328115-6330794 FORWARD LENGTH=2005
Length=2005
Score = 2878 bits (1558), Expect = 0.0
Identities = 1750/1843 (95%), Gaps = 11/1843 (1%)
Strand=Plus/Plus
Query 1 TCTCTGAGAATCCGCGTCTAGTAATGGCGGCGAAGCAAGGTTCCTTCAGGCATGTG-ATA 59
||| ||||||| | |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 46 TCTTTGAGAAT-C-CGTCTAGTAATGGCGGCGAAGCAAGGTTCCTTCAGGCATG-GAATA 102
Query 60 CTCGAGAAACGTGAAAGGCTTCTTTCCAATAATGGTTTCTCCGATTTCAGATTCACCGAC 119
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 CTCGAGAAACGGGAGAGGCTTCTCTCCAATAATGGTTTCTCCGATTTCAGATTCACCGAC 162
Query 120 ATCGAATCGAACGATCTACTCGAAAACGAAAACTAT-G--GAAGAACAAGGTTATGTTGC 176
|||||||| ||||||||||||||||||||||||| | | |||||||| |||||||||||
Sbjct 163 ATCGAATCTAACGATCTACTCGAAAACGAAAACTGTGGACGAAGAACACGGTTATGTTGC 222
Query 177 TGTTGCTCGTGTGGAAATCTATCAGAGAAAATCTCCGGAGTGTACCAAGATGCTAAAGAT 236
||||| |||||||| |||||||| |||||||| || ||||| ||| | ||||||||||||
Sbjct 223 TGTTGTTCGTGTGGTAATCTATCTGAGAAAATATCTGGAGTCTACGACGATGCTAAAGAT 282
Query 237 GTAGCGAGGAAAGCTTGGGATATGGGAGTATCTGATCCGAGAAAGATCGTCTTCTCCGCG 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 283 GTAGCGAGGAAAGCTTGGGAGATGGGAGTATCTGATCCGAGAAAGATCGTCTTCTCCGCT 342
Query 297 AAGATTGGTCTTGCTCTGACGATTGTTGCGCTTTTGATTTTTTATCAGGAACCTAATCCG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 AAGATTGGTCTTGCTCTGACGATTGTTGCGCTTTTGATTTTTTATCAGGAACCTAATCCG 402
Query 357 GATCTTAGTCGATACTCTGTTTGGGCTATTCTTACTGTCGTCGTCGTCTTCGAATTCACG 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GATCTTAGTCGATACTCTGTTTGGGCTATTCTTACTGTCGTCGTCGTCTTCGAATTCACC 462
Query 417 ATCGGAGCAACTCTAAGCAAAGGGTTTAATCGAGCGCTTGGGACATTATCAGCTGGAGGT 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 463 ATCGGAGCAACTCTAAGCAAAGGGTTTAATAGAGCGCTTGGGACATTATCAGCTGGAGGT 522
Query 477 CTTGCTCTTGGAATGGCTGAGCTTTCGACACTATTCGGTGACTGGGAAGAGCTCTTCTGC 536
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 523 CTTGCTCTTGGAATGGCTGAGCTTTCCACTTTATTCGGTGACTGGGAAGAGATCTTCTGC 582
Query 537 ACTCTTAGTATCTTCTGCATTGGGTTTCTCGCAACTTTCATGAAATTATACCCGTCGATG 596
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 583 ACTCTTAGTATCTTCTGCATTGGGTTTCTTGCAACTTTCATGAAACTATACCCGTCGATG 642
Query 597 AAAGCTTATGAATACGGGTTCAGGGTTTTCTTGCTTACGTATTGCTATATTCTGATTTCT 656
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 643 AAAGCTTATGAATACGGGTTCCGGGTTTTCTTGCTTACGTATTGCTACATTCTGATTTCT 702
Query 657 GGGTTCAGAACTGGGCAGTTCATACAAGTGGCTATTTCCCGGTTTCTGCTTATAGCTCTT 716
|||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||
Sbjct 703 GGGTTCAGAACTGGGCAGTTTATAGAAGTGGCTATCTCTCGGTTTCTGCTTATAGCTCTT 762
Query 717 GGTGCTGGTGTTAGTTTAGGTGTCAATATGTTTATTTATCCTATATGGGCTGGAGAGGAT 776
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 763 GGTGCTGGTGTTAGTTTAGGTGTTAATATGTTTATCTATCCTATATGGGCTGGAGAGGAT 822
Query 777 CTTCATAACCTTGTCGTCAAGAATTTTATGAATGTTGCGACTTCCCTTGAAGGTTGTGTG 836
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CTTCATAACCTTGTCGTGAAGAATTTTATGAATGTTGCGACTTCCCTTGAAGGTTGTGTG 882
Query 837 AACGAATACCTCCGCTGTGTCGAATACGAGAGAATCCCATCCAAAATCCTCACATACCAA 896
|| | ||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 883 AATGGATATCTCCGCTGTCTTGAATACGAGAGAATCCCATCCAAAATCCTCACGTACCAA 942
Query 897 GCCTCAGAGGATCCTGTTTACAAGGGTTACAGATCAGCGGTTGAATCAACCAGCCAAGAA 956
|| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 943 GCTTCAGAGGATCCTGTTTACAAGGGTTATAGATCAGCTGTTGAGTCAACCAGCCAAGAA 1002
Query 957 GAGTCTCTGATGAGTTTCGCAATATGGGAGCCGCCTCATGGACGATACAAGTCATTTAAC 1016
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 1003 GAGTCTCTGATGAGTTTCGCAATATGGGAGCCACCACATGGACCATACAAGTCATTTAAC 1062
Query 1017 TACCCATGGAAGAACTATGTCAAGCTCAGCGGCGCTCTCAAGCATTGTGCATTCACTGTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TACCCATGGAAGAACTATGTCAAGCTCAGCGGCGCTCTCAAGCATTGTGCATTCACTGTC 1122
Query 1077 ATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCAAAGGAACGGAGACAAGTT 1136
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1123 ATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCAGAGGAACGGAGACAAGTT 1182
Query 1137 TTTCGGCAAGAACTTCAGAGAGTGGGCGTAGAAGGAGCCAAATTGTTACGAGAGCTCGGT 1196
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1183 TTTCGGCAAGAACTTCAGAGAGTGGGCGTAGAAGGAGCTAAATTGTTAAGAGAGCTCGGT 1242
Query 1197 GAAAAGGTGAAGAAGATGGAGAAGCTAGGACCTGTCGACCTTCTCTTTGAAGTACACCTA 1256
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1243 GAAAAGGTGAAGAAGATGGAGAAGCTAGGACCAGTCGACCTTCTCTTTGAAGTACACCTA 1302
Query 1257 GCTGCCGAAGAATTACAGGACAAGATCGACAAGAAATCTTACCTTCTTGTCAATTCCGAA 1316
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GCTGCTGAAGAATTACAGCACAAGATCGACAAGAAATCTTACCTTCTTGTCAATTCCGAA 1362
Query 1317 TGCTGGGAGATCGGAAACCGAGCCATAAAGGAATCAGAGCCTCAAGAACTGCTCTCCCTA 1376
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1363 TGCTGGGAGATCGGAAACCGAGCCACCAAGGAATCAGAGCCTCAAGAACTGCTCTCCCTC 1422
Query 1377 GAAGATTCAGATCCACCAGAAAACCACGCGCCTCCAATCTACGCCTTCAAATCTCTAAGC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1423 GAAGATTCAGATCCACCAGAAAACCACGCGCCTCCAATCTACGCCTTCAAATCCCTAAGC 1482
Query 1437 GAGGCAGTTCTAGAGATACCGCCGAGCTGGGGAGAGAAGAATCATCGTCA-GCCGTTGAA 1495
|||||||||||||||||||| || |||||||| ||||||||||| ||| | || ||||||
Sbjct 1483 GAGGCAGTTCTAGAGATACCACCAAGCTGGGGCGAGAAGAATCACCGTGAAGC-GTTGAA 1541
Query 1496 CCATAGACCTACTCTCTCAAAACAGGTATCATGGCCTGCACGGCTTGTGCTTCCGCCGCA 1555
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1542 CCATAGACCTACTTTCTCAAAACAGGTGTCATGGCCTGCACGGCTTGTACTTCCGCCGCA 1601
Query 1556 T-TCGGAGACAACGAACGGAGCTTCACCGTTGGTGGATACGACAAAGACTTATGAAAGCG 1614
| | |||||| || ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1602 TCT-GGAGACGACTAACGGAGCTTCACCGTTGGTGGAGACAACAAAGACTTATGAAAGCG 1660
Query 1615 CGAGTGCATTGTCTCTCGCGACGTTCGCGTCTCTCCTCATTGAGTTCGTTGCTCGGTTGC 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 CGAGTGCATTGTCTCTCGCGACGTTCGCGTCTCTCCTCATTGAGTTCGTTGCTCGGTTGC 1720
Query 1675 AGAACGTGGTCGACGCATTCGAGGAGTTGAGCCAGAAGGCGAATTTCAAGGAGCCCGAGA 1734
|||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1721 AGAACGTGGTCGACGCGTTCAAGGAGTTAAGCCAGAAAGCGAATTTCAAGGAGCCGGAGA 1780
Query 1735 TTGTTACGACGGCGACTGATGTTGAATTCTCGGGCGAAAGAGTCGGACTTGGCCAGAAGA 1794
||||||| |||| |||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1781 TTGTTACAACGGGGACTGATGTTGAATTCTCTGGTGAAAGAGTTGGACTTGGCCAGAAGA 1840
Query 1795 TCCGTGGGTGTTTTGGTATGTAAGGTTTTTGTTTTTGCATCGG 1837
| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1841 TTCGTAGGTGTTTTGGGATGTAAGGTTTTTGTTTTTGCATCGG 1883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5