BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930011 Length=1623 Score E Sequences producing significant alignments: (Bits) Value AT3G20660.1 | Symbols: AtOCT4, 4-Oct | organic cation/carnitine... 2516 0.0 > AT3G20660.1 | Symbols: AtOCT4, 4-Oct | organic cation/carnitine transporter4 | chr3:7225135-7228595 REVERSE LENGTH=1802 Length=1802 Score = 2516 bits (1362), Expect = 0.0 Identities = 1541/1628 (95%), Gaps = 9/1628 (1%) Strand=Plus/Plus Query 1 TGTaaaaattaaaaaattaaa-TATGGAATCTCCAGATGAAAGAAACGGTAACGACGTCC 59 ||||||||| |||| | |||| |||||||||||| || || |||||||||||||| |||| Sbjct 64 TGTAAAAATCAAAACA-TAAATTATGGAATCTCCGGAGGATAGAAACGGTAACGATGTCC 122 Query 60 GACAACCGTTGCTGGAGAAAATTCCGGCGAAGAAAGAAGCGGAGGGAGAAGAGAGATTGT 119 |||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 123 GACAACCGCTGCTAGAGAAAATTCCGGTGAAGAAAGAAGCGGAGGGAGAGGAGAGATTAT 182 Query 120 GCATAGATGAGATGTTACAAAGATACTGCGGCGAGTTTGGTAGGTGGCAGCTGAAACACT 179 ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct 183 GCATAGATGAGATGTTACAAAGATATTGCGGCGAGTTTGGGAGGTGGCAGTTGAAACACT 242 Query 180 TTGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTTATGATATTTG 239 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 243 TCGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTGATGATATTTG 302 Query 240 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTTGGATTGTCGGGTCGGGTCATCT-AAC 298 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| Sbjct 303 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTCGGATTGTCGGGTCGGGTCAT-TGAAC 361 Query 299 TGCGA-TATGGATCCGAGTTCCTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 357 ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 362 TGCGAGT-TGGATCCGAGTTCTTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 420 Query 358 GGAGTGGGGATTGATTTGCGGTGAGAAGTATAAAGTTGGTCTTGTTCAAGCTCTTTTCTT 417 ||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct 421 GGAGTGGGGATTGATTTGCGGCGACAAGTATAAAGTTGGTCTTGTTCAGGCTCTCTTCTT 480 Query 418 CGCCGGATGCATGATCGGTGCAGGAGTATTCGGACATCTATCGGACTCCAAGCTAGGAAG 477 |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 481 CGCCGGCTGCATGATCGGTGCAGGAGTATTCGGACATTTATCGGACTCTAAGCTAGGAAG 540 Query 478 AAAAGGCTCGCTAACAGTTGTTTGCATTATCAACGCAATCTTTGGTATCGCAACAGCTTT 537 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 541 AAAAGGCTCGCTAACAGTTGTATGCATTATCAACGCAATCTTTGGTATCGCGACAGCTTT 600 Query 538 CTCCCCAAACTATTGGACCTATGTGGTTCTCCGGTTCTTGACTGGTTTCAGCACCGGTGG 597 |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 601 CTCCCCAAACTACTGGACCTATGTAGTTCTCCGTTTCTTGACTGGTTTCAGCACCGGTGG 660 Query 598 TGTTGGCCTAACTGCGTTTGTCCTAGCCACTGAACCCATAGGACCAAGCAAACGTGGTGT 657 |||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| ||||| Sbjct 661 TGTTGGCCTAACCGCGTTTGTCTTAGCCACTGAACCCATTGGACCGAGCAAACGCGGTGT 720 Query 658 AGCCGGAATGTCAACTTTCTACTTCTTCTCTGCCGGCATTGCACTTCTCTCCGGCATTGC 717 |||||||||||||||||||||||||||||| || ||||||||| || | |||||||| || Sbjct 721 AGCCGGAATGTCAACTTTCTACTTCTTCTCCGCGGGCATTGCAGTTTTATCCGGCATCGC 780 Query 718 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCGTCTCTCTTGTT 777 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 781 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCATCTCTCTTGTT 840 Query 778 CCTACTCATTGTTATCCCATTCATCTCCGAGTCCCCTAGGTGGTATCTCGTGAGAGGCAA 837 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 841 CCTACTCATTGTTATCCCATTCATATCCGAGTCCCCAAGGTGGTATCTCGTGAGAGGCAA 900 Query 838 AGTAGACGAGGCGATGAAGTTGATGCATTTGATCGCTAAAACGAACGGGCGCCACATTCC 897 |||||| |||||||||||| ||||||||| |||||||||||||||||| || |||||||| Sbjct 901 AGTAGATGAGGCGATGAAGCTGATGCATTCGATCGCTAAAACGAACGGACGTCACATTCC 960 Query 898 CGCTGGAGTCACTCTTGCTCTT-GACGACGACGTGGAAAATAAAAACGGAGAGAGGAATA 956 ||||| |||||||||||| || |||||||| ||||||||||| ||||| |||||||||| Sbjct 961 AGCTGGTGTCACTCTTGCT-TTAGACGACGATGTGGAAAATAACAACGGGGAGAGGAATA 1019 Query 957 CTGCTGTTGAGGGTTCGCTCAAGGATGTTATACTGTCGCCTCTCATGCGGATCAGACTTC 1016 | ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 1020 CCGCTGTTGAGGGTTCGCTGAAAGATGTTATACTGTCGCCTCTCATGCGGATGAGACTTG 1079 Query 1017 TCATTTCGGTTGCCATAAGTTTCACAGTCTCGATTGTATACTACGGACTAAGCCTCAACG 1076 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1080 TCATTTCGGTTGCCATAAGTTTCACAGTCTCTATTGTATACTACGGACTAAGCCTCAACG 1139 Query 1077 TAGTCAACCTCAAGACCAATCTCTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1136 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1140 TAGGCAACCTCAAGACCAATCTTTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1199 Query 1137 CCGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1196 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CGGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1259 Query 1197 GGACACAGTGGTTCAGCTGCGTTTTCTGTCTCGTAGGATTCGCTGTATGGGGAGCTGGTC 1256 |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct 1260 GGACACAGTGGTTCAGCTGCGTTTTCTGCCTCGTTGGATTCTCTGTATGGGGAGCTGGTC 1319 Query 1257 CATGGAAATCGGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1316 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 CATGGAAATCAGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1379 Query 1317 ACAATCTTCTGTTCATATACATCGCAGAGCTGTTTCCAACAGTGGTGAGGAACGCAGCAT 1376 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1380 ACAATCTTCTGTTCATATACATCGCGGAGCTGTTTCCAACAGTGGTGAGGAACGCGGCAT 1439 Query 1377 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCAATTCTGGCGCCTTTTGTGGTGGTTT 1436 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1440 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCGATTCTGGCGCCGTTTGTGGTGGTTT 1499 Query 1437 TAGGGGAGGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1496 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TAGGGGAAGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1559 Query 1497 CGTTTTACTTGCCGGAGACGTTAAACAAGCCGTTGTATGACACAATGTCTGGAATGCACG 1556 ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 1560 CGTTTTACTTGCCAGAGACGTTAAACAAGCCGTTGTATGATACAATGTTTGGGATGCACG 1619 Query 1557 AAGCTGAGAGTGAGAGTAACAGAGGAAGAGGAGAAGTAATATGTTAAA-GAAACAGAATT 1615 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1620 AAGCTGAGAGTGAGAGTAACAGAGAAAGAGGAGAAGTAATATGTTAAAAGAAACAGAATT 1679 Query 1616 TACTCTTA 1623 ||| |||| Sbjct 1680 TACACTTA 1687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80170270365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5