BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930029
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20820.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1899 0.0
> AT3G20820.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:7280878-7282177 FORWARD LENGTH=1300
Length=1300
Score = 1899 bits (1028), Expect = 0.0
Identities = 1101/1137 (97%), Gaps = 1/1137 (0%)
Strand=Plus/Plus
Query 9 aaaaaaaaTCTTTCAAACAATGAATCTCAACGTCGTCGTTTTACTCTTTCTCCTTCTAAT 68
||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 35 AAAAAGAATC-TTCAAACAATGAATCTCAACGTCGTCGTTTTACTCCTACTCCTTCTAAT 93
Query 69 CTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGC 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGC 153
Query 129 TCTTCACGAGCCATACCTCGGCATTTTCAACTCATGGACCGGCCAAGACTGTTGCCACAA 188
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 154 TCTTCACGAGCCTTACCTCGGCATTTTCAACTCATGGACAGGCCAAGACTGTTGCCACAA 213
Query 189 CTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAACCTCCGCGG 248
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 214 CTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAATCTCCGCGG 273
Query 249 CGAGTCAGAAGATCCAATCTTCGAACGAGCTCATCGAACCGGTTACATGACCGGCCACAT 308
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 274 CGAGTCAGAAGATCCAATCTTCGAACGAGCTCACCGAACCGGTTACATGACCGGACACAT 333
Query 309 CTCCGCCTCGATATGTGACCTCACTCGTCTCTCCGCCATTACCATCGCCGATTGGAAAGG 368
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 334 CTCCGCCTCGATATGTGAGCTCACTCGTCTCTCCGCCATTACAATCGCCGATTGGAAAGG 393
Query 369 TATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTCCCTTTTCTCCGTACACTCGACTT 428
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 394 TATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTTCCTTTTCTCCGTACACTCGACTT 453
Query 429 AATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGC 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGC 513
Query 489 TGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCGTTAACCAACCT 548
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 514 TGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCATTAACCAATCT 573
Query 549 CTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGGGTAATCCCGTCGGA 608
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 574 CTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGTGTAATCCCGTCGGA 633
Query 609 CGTCGGGAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAATCGAATAACCGGTCG 668
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 634 CGTCGGAAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAACCGAATAACCGGTCG 693
Query 669 GATCCCTGAATCCTTAACCACTATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCA 728
|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 694 GATCCCAGAATCATTAACCAATATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCA 753
Query 729 ACTCTACGGTACAATCCCACCGTCGCTAGGACGTATGTCGGTTCTAGCCACACTTAACCT 788
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 754 ACTCTACGGTACAATCCCACCGTCTCTAGGACGTATGTCGGTACTAGCCACACTTAACCT 813
Query 789 CGACGGAAACAAAATCTCCGGAGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAA 848
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 814 CGACGGAAACAAAATCTCCGGCGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAA 873
Query 849 TCTGAATTTGAGCCGGAATTTACTACAAGGGAAGATACCGGAAGGGTTTGGACCAAGGTC 908
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 874 TCTGAATTTGAGCCGGAACTTGCTACAAGGGAAGATACCTGAAGGGTTTGGACCAAGGTC 933
Query 909 TTACTTCACTGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATCCCAAGATCGAT 968
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 934 TTACTTCACAGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATACCGAGATCGAT 993
Query 969 CTCTGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGAT 1028
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTCAGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGAT 1053
Query 1029 TCCGGTGGGTTCGCCGTTCGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCT 1088
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TCCGGTAGGTTCACCGTTTGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCT 1113
Query 1089 TTGTGGTAGACCTTTAAGGGCTTGTTTGAAAAATTGATTTTTATATGTAATTTGAGT 1145
|||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1114 TTGTGGTAAACCTTTAAGAGCTTGCTTGAAAAATTGATTTTTATATGTAATTTGAGT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5