BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930053 Length=413 Score E Sequences producing significant alignments: (Bits) Value AT3G21055.1 | Symbols: PSBTN | photosystem II subunit T | chr3:... 682 0.0 > AT3G21055.1 | Symbols: PSBTN | photosystem II subunit T | chr3:7376635-7377186 REVERSE LENGTH=552 Length=552 Score = 682 bits (369), Expect = 0.0 Identities = 395/408 (97%), Gaps = 0/408 (0%) Strand=Plus/Plus Query 6 AATCAACTATCAAGCAATGGCATCGATGACCATGACTGCTACTTTCCTCCCGGCCATCGC 65 |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||| Sbjct 99 AATCAACTATCAAGCAATGGCATCGATGACCATGACCGCTACCTTCTTCCCGGCCGTCGC 158 Query 66 CAAGCTTCCCTCAGCCACCGGCGGACGAAGGCTCTCGGTAGTCAGAGCCTCCACGAGCGA 125 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 159 CAAGGTTCCCTCAGCCACCGGCGGACGAAGGCTCTCCGTAGTCAGAGCCTCCACGAGCGA 218 Query 126 CAACACACCCAGCTTACAAGTCAAGGAACAGTGCAGCACCACAATGAGGAGGGACCTCAT 185 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 219 CAACACACCCAGCTTAGAAGTCAAGGAACAGAGCAGCACCACAATGAGGAGGGACCTCAT 278 Query 186 GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAAGTAGCCATGGCTGAAGAAGA 245 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 279 GTTCACGGCTGCAGCTGCAGCGGTTTGTTCTTTGGCTAAGGTAGCCATGGCTGAAGAAGA 338 Query 246 AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 AGAGCCCAAGCGAGGGACAGAGGCGGCCAAGAAGAAATACGCACAAGTTTGTGTCACAAT 398 Query 306 GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAAACCACCTTCTTCATGCCTATCCCT 365 |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| || Sbjct 399 GCCTACGGCCAAGATCTGCCGCTACTGATTCAACAACCCACCTTCTGCATGTCTATCTCT 458 Query 366 CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG 413 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 459 CTCTTTCAATTTCGGTAAATTTTCTCAATTAAGTTTGGTCTGTAATCG 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19554154361 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5