BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930074
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21200.1 | Symbols: PGR7 | proton gradient regulation 7 | ch... 1580 0.0
> AT3G21200.1 | Symbols: PGR7 | proton gradient regulation 7 |
chr3:7436026-7438011 FORWARD LENGTH=1185
Length=1185
Score = 1580 bits (855), Expect = 0.0
Identities = 951/996 (95%), Gaps = 11/996 (1%)
Strand=Plus/Plus
Query 2 CTCTCTCTCAGAGCAACCAAAATGCAACTCCAAACCCAATCCTTCGCTCTCAATCTTCTC 61
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 CTCTCTATCAGAGCAACCAAAATGCAACTCCAAACCCAATCCTTCGCTCTCAATCTTCTG 104
Query 62 CCATCTCCGAATTTCGCCAAACCCATCGAAAGACGTGAATTCATCTCTCTAAAACGAGAC 121
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 105 CCATCTCCAAATTTCGCCAAACCCATCGAGAGACGTGAATTCATCTCTCTAAAACGAGAC 164
Query 122 CCATCTCGTCCAATTTCTCTCCGATGTTCCGTTTCCACGGCTTTGGATACTCCGGCGACC 181
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 165 CCATCTCGTCCAATTTCACTCCGATGTTCCGTTTCCACGACTTTGGATACTCCGGCGACC 224
Query 182 GCTTCGACCCACAAGCCCTTTCCGGCGGAGGTTTCAAGGAGTATCATGGAGCTTTCCTCC 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 225 GCTTCGACCCACAAGCCCTTTCCGGCGGAGGTTTCAAGGAGTATCATGGAGCTTTCATCT 284
Query 242 GTTGGAACTCTCTCCACTTTGACCCACGACGGCTGGCCTCTCGGCGTAGGAGTTCGCTTC 301
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 285 GTTGGAACTCTCTCCACTTTGACCCACGACGGTTGGCCTCTCGGCGTAGGAGTTCGCTTC 344
Query 302 GCCGTTGACAAAGATGGCACTCCTGTTCTATGCCTCAATCGCTCTTTCTCTCCTGACAAG 361
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 345 GCCGTTGACAAAGATGGCACTCCTGTTCTTTGCCTCAATCGCTCTGTCTCTCCTGACAAG 404
Query 362 AGGTCTGCTCTTCATGTTCAGTTAGAACAATGTGGATTAAGGACTCCTCAGTGTACGATA 421
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 405 AGGTCTGCTCTTCATGTTCAGTTAGAACAATGTGGATTGAGGACTCCTCAGTGTACGATA 464
Query 422 CAAGGTAGCATTGGTCGACCTGGAGACGATACTGTTCTAAAGCGTCTTAGTGCTACATGG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CAAGGTAGCATTGGTCGACCTGGAGACGATACTGTTCTAAAGCGTCTTAGTGCTACATGG 524
Query 482 AGGGAAAAGTTTGGCGAAGAAGTTGAGGAAGACAGTTTATATGTTGTTGCAGTTGACCGT 541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 525 AGGGAAAAGTTTGGCGAAGAAGTTAAGGAAGACAGTTTATATGTTGTTGCAGTTGACCGT 584
Query 542 GTTCTCCAAATGGAAGATTTCATGGAGGACGGAATCTGGGTGGCGTCATCAGATTATAAA 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 585 GTTCTCCAAATGGAAGATTTCATGGAGGACGGAATCTGGGTGGCGTCATCAGATTACAAA 644
Query 602 AATGCAAGTCCTGACCCTCT-CAGAGATGTTGCAGAAGACATTGTCAACAATATTAACAC 660
|||||||||||||||||||| | ||||| |||||||||| ||||||||| | |||||| |
Sbjct 645 AATGCAAGTCCTGACCCTCTTC-GAGATATTGCAGAAGATATTGTCAACCAGATTAACGC 703
Query 661 TAACAACATGGAAGACATTTTCCGTTTCTGCAACGTATACGTGGATCTAGACTTTGTGGT 720
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 704 TAACAACATGGAAGACATCTTCCGTTTCTGCAATGTATACGTGGATCTAGACTTTGTGGT 763
Query 721 TTCGGAAACAAAGATGATATGGATGGATAGGCTTGGATTTGACCTCCGAGTATGGTCTCC 780
||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 764 TTCAGAAACAAAGATGATATGGATGGATAGGCTTGGATTCGACCTTCGGGTATGGTCTCC 823
Query 781 ACGAGGTGTATATGATGTGAGGATTCCATTTCCAATGGAAGTAACAGATGAGAAGGGAGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 824 ACGAGGTGTATATGATGTGAGGATTCCATTTCCAATGGAAGTAACAGATGAAAAGGGAGC 883
Query 841 AAAATCATCCTTCAATGGGATGTCACAGCTTGCTTGGGAAGTAGAGAAAAGCTATTGCCC 900
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 884 AAAATCATCCTTCAATGGAATGTCACAGCTCGCTTGGGAAGTAGAGAAAAGCTATTGCCC 943
Query 901 TGCAAATTTCAACAAGGTCAAACTATTTAAGCAAGTTGTGGGATCATC--A--C--ACAA 954
|||| |||||||||||||||||||| |||||||||||||||||||||| | | ||||
Sbjct 944 TGCAGATTTCAACAAGGTCAAACTACTTAAGCAAGTTGTGGGATCATCTCATTCTCACAA 1003
Query 955 GGGACGA---CAATAACAGTTCTATTGACttttttt 987
|||| || |||||||| | ||| |||||||||||
Sbjct 1004 GGGAGGAGGACAATAACAATACTAATGACTTTTTTT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5