BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930129
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21670.1 | Symbols: | Major facilitator superfamily protein... 2870 0.0
> AT3G21670.1 | Symbols: | Major facilitator superfamily protein
| chr3:7626757-7629151 REVERSE LENGTH=2155
Length=2155
Score = 2870 bits (1554), Expect = 0.0
Identities = 1733/1820 (95%), Gaps = 10/1820 (1%)
Strand=Plus/Plus
Query 1 TCTAACTTCTCAAATAAGAAAATGGTTCATGTGTCATCATCTCATGGAGCAAAAGATGGC 60
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 177 TCTAACTGCTCAAATAAGAAAATGGTTCATGTGTCATCATCTCATGGAGCCAAAGATGGC 236
Query 61 TCAGAAGAAG-CTTTCGATTACCGAGGAAATCCACCGGATAAGTCTAAAACCGGTGGATG 119
|| ||||||| || | |||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 237 TCTGAAGAAGCCTAT-GATTACAGAGGAAACCCACCAGATAAGTCTAAAACCGGTGGATG 295
Query 120 GTTAGGCGCCGGTTTAATCTTAGGGAGTGAGCTATCGGAGAGAATATGCGTGATGGGCAT 179
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 296 GTTAGGCGCCGGTTTAATTTTAGGGAGCGAGCTATCAGAGAGAATATGCGTGATGGGCAT 355
Query 180 ATCAATGAATCTAGTGACTTACCTTGTCGGAGATTTACACATCTCATCAGCTAAATCAGC 239
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 ATCAATGAATCTAGTGACGTACCTTGTTGGAGATTTACACATCTCATCAGCTAAATCAGC 415
Query 240 GACTATAGTCACCAACTTCATGGGAACTCTTAACC-TCTTAGGACTTCTTGGTGGTTTCT 298
||| ||||||||||||||||||||||||||||||| || |||| ||||| |||||||| |
Sbjct 416 GACCATAGTCACCAACTTCATGGGAACTCTTAACCTTC-TAGGGCTTCTCGGTGGTTTTT 474
Query 299 TGGCTGACGCTAAACTCGGTCGCTACAAGATGGTTGCAATCTCAGCTTCTGTTACAGCTC 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 TGGCTGACGCTAAACTCGGTCGCTACAAGATGGTTGCAATCTCAGCTTCTGTCACAGCTC 534
Query 359 TGGGAGTGTTACTTTTGACGGTGGCTACAACCATCTCGAGTATGAGACCACCACCATGTG 418
|||||||||| |||||||||||||||||||| ||||| || |||||||||||| |||||
Sbjct 535 TGGGAGTGTTGCTTTTGACGGTGGCTACAACTATCTCAAGCATGAGACCACCAATATGTG 594
Query 419 ATGATTTCAGGAGACTTCACCATCAGTGCATAGAAGCAAACGGACACCAGTTGGCTCTTC 478
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ACGATTTCAGGAGACTTCATCATCAGTGCATAGAAGCAAACGGACACCAGTTGGCTCTTC 654
Query 479 TCTATGTTGCTCTCTATACCATAGCTCTAGGTGGAGGAGGAATCAAATCCAACGTCTCGG 538
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 655 TCTATGTTGCTCTCTATACCATAGCTCTAGGCGGAGGAGGAATCAAATCCAACGTCTCTG 714
Query 539 GTTTCGGGTCTGACCAGTTCGATACTAGTGATCCTAAGGAAGAGAAACAGATGATTTTCT 598
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 GTTTTGGGTCTGACCAGTTCGATACTAGTGATCCTAAAGAAGAGAAACAGATGATTTTCT 774
Query 599 TCTTCAACAGATTCTATTTCTCCATCAGCGTTGGCTCTCTTTTCGCCGTGATTGCTCTGG 658
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 775 TCTTCAACAGATTCTATTTCTCCATCAGCGTCGGCTCTCTCTTCGCCGTGATTGCTCTTG 834
Query 659 TTTACGTTCAGGATAACGTCGGGAGAGGCTGGGGTTACGGGATCTCGGCCGCGACTATGG 718
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 835 TTTACGTTCAGGACAACGTCGGGAGAGGCTGGGGTTACGGGATCTCTGCCGCGACTATGG 894
Query 719 TGGTTGCAGCCATTGTTTTGCTTTGTGGAACCAAACGGTACCGTTTCAAGAAACCTAAAG 778
||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 895 TGGTTGCAGCCATTGTTTTACTCTGCGGAACGAAACGGTACCGTTTCAAGAAACCTAAAG 954
Query 779 GAAGCCCTTTTACAACAATATGGAGGGTTGGTTTCTTGGCTTGGAAGAAAAGAAAGGAGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GAAGCCCTTTTACAACAATATGGAGGGTTGGTTTCTTGGCTTGGAAGAAAAGAAAGGAGA 1014
Query 839 GTTACCCAGCGCATCCGAGTCTTTTGAACGGTTATGACAACACCACGGTTCCACACACAG 898
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTTACCCTGCGCATCCAAGTCTTTTGAACGGTTATGACAACACCACGGTTCCACACACAG 1074
Query 899 AGAGGCTAAAGTGTTTAGACAAAGCCGCGATTCTC-AAGAACGAGAGTTCTCCTAGTTCG 957
||| ||| |||||||||||||||||||| ||| || ||||||||||| |||||||| |||
Sbjct 1075 AGATGCTTAAGTGTTTAGACAAAGCCGCAATT-TCCAAGAACGAGAGCTCTCCTAGCTCG 1133
Query 958 AAGGACTTAGAAGAGAAGGATCCGTGGATCGTTTCGACTGTTACACAAGTCGAAGAAGTG 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AAGGACTTCGAAGAGAAGGATCCGTGGATCGTTTCGACTGTTACACAAGTCGAAGAAGTG 1193
Query 1018 AAACTCGTGATGAAATTGGTGCCTATTTGGGCAACAAACATTCTTTTCTGGACGATTTAC 1077
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1194 AAACTCGTGATGAAATTGGTACCGATTTGGGCAACGAACATTCTTTTCTGGACGATTTAC 1253
Query 1078 TCTCAAATGACGACTTTCACGGTAGAACAAGCAACGTTTATGGACCGAGAACTCGGATCT 1137
|| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1254 TCCCAAATGACGACTTTCACGGTCGAACAAGCGACGTTTATGGACCGAAAACTCGGATCT 1313
Query 1138 TTCACTGTTCCTGCAGGCTCCTACTCTGCTTTTCTCATACTCACAATTCTCCTCTTCACT 1197
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1314 TTCACTGTTCCTGCAGGCTCTTACTCTGCTTTCCTCATACTCACAATTCTCCTCTTCACT 1373
Query 1198 TCCCTTAACGAGAGAGTCTTTGTTCCTTTAACAAGAAGGCTCACAAAAAAGCCTCAAGGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TCCCTTAACGAGAGAGTCTTTGTTCCTTTAACAAGAAGGCTCACAAAAAAGCCTCAAGGA 1433
Query 1258 ATCACCAGCCTCCAGAGAATCGGAGTAGGCCTTGTGTTCTCAATGGCTGCAATGGCCGTA 1317
||||| ||||| ||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 1434 ATCACAAGCCTACAGAGAATCGGAGTAGGGCTAGTATTCTCAATGGCTGCAATGGCTGTA 1493
Query 1318 GCTGCGGTTATAGAGAACGCTAGACGCGAGGCAGCGGTTAACAACGGTACGAAAATAAGC 1377
|| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1494 GCCGCGGTTATAGAGAACGCTAGACGCGAGGCAGCGGTTAACAACGATAAGAAAATAAGC 1553
Query 1378 GCGTTTTGGTTGGTTCCACAGTATTTCTTAGTCGGTGCGGGTGAGGCCTTTGCTTACGTT 1437
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCGTTTTGGTTGGTTCCACAATATTTCTTAGTCGGTGCGGGTGAGGCCTTTGCTTACGTT 1613
Query 1438 GGACAGCTTGAGTTCTTCATAAGAGAAGCACCAGAGAGGATGAAATCGATGAGCACCGGA 1497
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GGACAGCTTGAGTTCTTTATAAGAGAAGCACCAGAGAGGATGAAATCGATGAGCACCGGA 1673
Query 1498 TTGTTTCTAAGTACGATTTCGATGGGATTCTTCGTGAGTAGCTTGCTCGTTTCGCTTGTG 1557
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1674 TTGTTTCTAAGCACGATATCGATGGGATTCTTCGTGAGTAGCTTGCTTGTTTCGCTTGTT 1733
Query 1558 GATAGGGTTACAGACAAAAGATGGCTTAGAAGTAACCTTAACAAAGCGAGATTGAACTAC 1617
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GATAGGGTTACAGACAAAAGCTGGCTTAGAAGTAACCTTAACAAAGCGAGATTGAACTAC 1793
Query 1618 TTCTACTGGTTACTTGTTGTCTTGGGAGCATTGAACTTCTTGATTTTTCTTGTGTTTGCC 1677
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1794 TTCTACTGGTTACTTGTTGTCTTGGGAGCATTGAACTTCTTGATTTTTATTGTGTTTGCC 1853
Query 1678 ATGAAACATCAGTATAAAGCTGATGTGATTAGTGTTGT-GATTGA-TGATGATGATTCAG 1735
||||||||||||||||||||||||||||||| |||||| | | || ||||||||||||||
Sbjct 1854 ATGAAACATCAGTATAAAGCTGATGTGATTACTGTTGTTG-T-GACTGATGATGATTCAG 1911
Query 1736 TGGAGAAGGAGGTGAAGAAGAAAGAGAGCTCTGAATTTGAGCTTAAGGACATTCCTTGAA 1795
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 TGGAGAAGGAAGTGACGAAGAAAGAGAGCTCTGAATTTGAGCTTAAGGACATTCCTTGAA 1971
Query 1796 ACAAGATTTTGAAGAAGAAA 1815
|| |||||| ||||||||||
Sbjct 1972 ACCAGATTTAGAAGAAGAAA 1991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5