BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930149
Length=269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21860.1 | Symbols: ASK10, SK10 | SKP1-like 10 | chr3:769977... 252 1e-66
AT3G21850.1 | Symbols: ASK9, SK9 | SKP1-like 9 | chr3:7697089-7... 219 1e-56
AT3G21830.1 | Symbols: ASK8, SK8 | SKP1-like 8 | chr3:7693481-7... 207 3e-53
AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:163790... 176 9e-44
AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:164800... 171 4e-42
> AT3G21860.1 | Symbols: ASK10, SK10 | SKP1-like 10 | chr3:7699777-7700235
REVERSE LENGTH=459
Length=459
Score = 252 bits (136), Expect = 1e-66
Identities = 214/251 (85%), Gaps = 7/251 (3%)
Strand=Plus/Plus
Query 2 CCGACGAGGATCTCAAGAAATGGGACGAA--AAGTCATGGAAAAAGATCAATTAACGCTC 59
||||||||||||||||||| |||||| || || ||||||||||| |||||| ||| ||
Sbjct 212 CCGACGAGGATCTCAAGAAGTGGGAC-AAGGAATTCATGGAAAAATATCAATCCACGATC 270
Query 60 TTTGATCTCATTAAT-GCTGCTAGTTACCTAGACATAC-AAAGCCTTCTTGATCTAGCAT 117
|||||||||||| || ||||| | ||||||| |||| | |||||||||||||||||||||
Sbjct 271 TTTGATCTCATT-ATGGCTGCGAATTACCTAAACAT-CAAAAGCCTTCTTGATCTAGCAT 328
Query 118 GCCAAACTGCCTCGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCGCGAATTCTTCA 177
||||||| | | ||||||||| ||||| ||| ||| |||| || |||||| |||||||||
Sbjct 329 GCCAAACCGTCGCGGATATGATCAAAGACAACACTGTGGAGCACACTCGCAAATTCTTCA 388
Query 178 ACATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGG 237
||||||||||||||| ||||| |||||||||| |||| |||| || ||| ||||| ||
Sbjct 389 ACATTGAGAATGATTATACACATGAGGAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGG 448
Query 238 CTTTTGAATGA 248
||||||||||
Sbjct 449 GTTTTGAATGA 459
> AT3G21850.1 | Symbols: ASK9, SK9 | SKP1-like 9 | chr3:7697089-7697550
REVERSE LENGTH=462
Length=462
Score = 219 bits (118), Expect = 1e-56
Identities = 211/254 (83%), Gaps = 13/254 (5%)
Strand=Plus/Plus
Query 2 CCGACGAGGATCTCAAGAAATGGGACGAA-AAG-TCATGGAAAAAGATCA-ATTAACGCT 58
||||||| ||||||||||| |||||| || || |||||||||||||| | || ||| |
Sbjct 215 CCGACGATGATCTCAAGAAGTGGGAC-AAGGAGTTCATGGAAAAAGAT-ACATCCACGAT 272
Query 59 CTTTGATCTCATTAATGCTGCTAGTTACCTAGACATAC-AAAGCCTTCTTGATCTAGCAT 117
|||||||||||| || ||||| | ||||||| |||| | |||||||| ||||||||||||
Sbjct 273 CTTTGATCTCATCAAGGCTGCGAATTACCTAAACAT-CAAAAGCCTTTTTGATCTAGCAT 331
Query 118 GCCAAACTGCCTCGGATATGAGCAAAGCCAAAACT-CTGGACCAGACTCGCGAATTCTTC 176
||||||| | | |||| || | ||||| ||| ||| || || |||| |||||||||||||
Sbjct 332 GCCAAACCGTCGCGGAAATCATCAAAGGCAACACTCCT-GAGCAGATTCGCGAATTCTTC 390
Query 177 AACATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTG-TTCTTAAGGACTATCAAAA 235
||||||||||||||||| ||||||||||||||| ||| | ||| || ||| || |||
Sbjct 391 AACATTGAGAATGATTTAACACCTGAGGAAGAAGCAGC-GATTCGTAGGGAGAAT-AAAT 448
Query 236 GG-CTTTTGAATGA 248
|| |||||||||||
Sbjct 449 GGGCTTTTGAATGA 462
> AT3G21830.1 | Symbols: ASK8, SK8 | SKP1-like 8 | chr3:7693481-7693939
REVERSE LENGTH=459
Length=459
Score = 207 bits (112), Expect = 3e-53
Identities = 208/253 (82%), Gaps = 11/253 (4%)
Strand=Plus/Plus
Query 2 CCGACGAGGATCTCAAGAAATGGGACGAA-AAG-TCATGGAAAAAGATCAATTAACGCTC 59
||||||| |||||| |||| |||||| || || |||||||||||||| ||| ||| ||
Sbjct 212 CCGACGATGATCTCGAGAAGTGGGAC-AAGGAGTTCATGGAAAAAGATAAATCCACGATC 270
Query 60 TTTGATCTCATTAATGCTGCTAGTTACCTAGACATAC-AAAGCCTTCTTGATCTAGCATG 118
|||| ||||| |||||||| | || |||| ||| || ||||||||||| |||||||| |
Sbjct 271 TTTGCTCTCACCAATGCTGCGAATTTCCTAAACA-ACAAAAGCCTTCTTCATCTAGCAGG 329
Query 119 CCAAACTGCCTCGGATATGAGCAAAGCCAAAACTCTGGACCAGACT-CGCGAATTCTTCA 177
|||||| | | ||||||||| ||||| ||| |||| | | |||| | |||||||||||||
Sbjct 330 CCAAACCGTCGCGGATATGATCAAAGGCAACACTCCGAAGCAGA-TGCGCGAATTCTTCA 388
Query 178 ACATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTG-TTCTTAAGGACTATCAAAAG 236
|||||||||||||||| ||||||||||||||| ||| | ||| || ||| || ||| |
Sbjct 389 ACATTGAGAATGATTTAACACCTGAGGAAGAAGCAGC-GATTCGTAGGGAGAAT-AAATG 446
Query 237 G-CTTTTGAATGA 248
| |||||||||||
Sbjct 447 GGCTTTTGAATGA 459
> AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461
FORWARD LENGTH=459
Length=459
Score = 176 bits (95), Expect = 9e-44
Identities = 201/250 (80%), Gaps = 15/250 (6%)
Strand=Plus/Plus
Query 7 GAGGATCTCAAGAAATGGGACGAAAAG-TCATGGAAAAAGATCAATTAACGC-TCTTTGA 64
||||||||||| || |||||||| ||| ||||||| || |||| || | |||||||
Sbjct 217 GAGGATCTCAACAACTGGGACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGA 275
Query 65 TCTCATTAATGCTGCTAGTTACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCA 121
||||| |||||| | |||||| | ||||| |||| ||| |||||||| | |||||||
Sbjct 276 ACTCATCCTTGCTGCGAATTACCTCA-ACATAAAAAG-CTTGCTTGATCTCA-CATGCCA 332
Query 122 AACTGCCT-CGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAA 178
||||| | |||| |||| ||||| ||| |||| || ||| ||| | || | |||||
Sbjct 333 AACTG-TTGCGGACATGATCAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAA 389
Query 179 CATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGC 238
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||
Sbjct 390 CATTGAGAATGATTTTACACCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGC 449
Query 239 TTTTGAATGA 248
||||||||||
Sbjct 450 TTTTGAATGA 459
> AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:16480022-16480480
REVERSE LENGTH=459
Length=459
Score = 171 bits (92), Expect = 4e-42
Identities = 200/250 (80%), Gaps = 15/250 (6%)
Strand=Plus/Plus
Query 7 GAGGATCTCAAGAAATGGGACGAAAAG-TCATGGAAAAAGATCAATTAACGC-TCTTTGA 64
||||||||||| || |||||||| ||| ||||||| || |||| || | |||||||
Sbjct 217 GAGGATCTCAACAAGTGGGACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGA 275
Query 65 TCTCATTAATGCTGCTAGTTACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCA 121
||||| |||||| | |||||| | ||||| |||| ||| ||||||| | |||||||
Sbjct 276 ACTCATCCTTGCTGCGAATTACCTCA-ACATAAAAAG-CTTGTTTGATCTCA-CATGCCA 332
Query 122 AACTGCCT-CGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAA 178
||||| | |||| |||| ||||| ||| |||| || ||| ||| | || | |||||
Sbjct 333 AACTG-TTGCGGACATGATCAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAA 389
Query 179 CATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGC 238
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||
Sbjct 390 CATTGAGAATGATTTTACACCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGC 449
Query 239 TTTTGAATGA 248
||||||||||
Sbjct 450 TTTTGAATGA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12315598505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5