BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930155 Length=416 Score E Sequences producing significant alignments: (Bits) Value AT3G21890.1 | Symbols: | B-box type zinc finger family protein... 579 9e-165 > AT3G21890.1 | Symbols: | B-box type zinc finger family protein | chr3:7709113-7709733 REVERSE LENGTH=621 Length=621 Score = 579 bits (313), Expect = 9e-165 Identities = 376/405 (93%), Gaps = 9/405 (2%) Strand=Plus/Plus Query 13 AGATTTAGAAAAATGTGTAGAGGCTTGATCTTTAATGAAGAAGAGAGCAGAAGAAGCCAC 72 ||||| |||||||||||||||||||||| |||| ||||||||||||||||| || Sbjct 59 AGATTGAGAAAAATGTGTAGAGGCTTGA---ATAAT---GAAGAGAGCAGAAGAAGTGAC 112 Query 73 GG-TGATGGTTGCCGGAGTCTTTGCACGAGACCGAGTGTTCCGGTTAGGTGTGAGCTTTG 131 || || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 113 GGAGGA-GGTTGCCGGAGTCTCTGCACGAGACCGAGTGTTCCGGTAAGGTGTGAGCTTTG 171 Query 132 TGGCGGCGATGCCTCCGTGTTCTGTGAGGCTGACTCGGCGTTTCTCTGTAGAAAATGTGA 191 | ||| || ||||||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 172 CGACGGAGACGCCTCCGTGTTCTGTGAAGCGGACTCGGCGTTCCTCTGTAGAAAATGTGA 231 Query 192 CCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCAC 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 CCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCAC 291 Query 252 TTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTT 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTT 351 Query 312 ACCGTCGGTGACGACGGTGGGAGAAGCCACCGTGGAGAGTAGAAGTGAACAAGATAATCA 371 |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| Sbjct 352 ACCGTCGGTGACGACGGTCGGAGAAACCACCGTGGAGAATAGAAGTGAACAAGATAATCA 411 Query 372 TGAGGTTCCGTTTGTGTTTCTCTGAtttttagtttttttttGGTG 416 ||||||||||||||| ||||||||||| |||| ||||||| |||| Sbjct 412 TGAGGTTCCGTTTGTTTTTCTCTGATTATTAGATTTTTTT-GGTG 455 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19704957608 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5