BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930155

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21890.1 | Symbols:  | B-box type zinc finger family protein...   579    9e-165


> AT3G21890.1 | Symbols:  | B-box type zinc finger family protein 
| chr3:7709113-7709733 REVERSE LENGTH=621
Length=621

 Score =  579 bits (313),  Expect = 9e-165
 Identities = 376/405 (93%), Gaps = 9/405 (2%)
 Strand=Plus/Plus

Query  13   AGATTTAGAAAAATGTGTAGAGGCTTGATCTTTAATGAAGAAGAGAGCAGAAGAAGCCAC  72
            ||||| ||||||||||||||||||||||    ||||   |||||||||||||||||  ||
Sbjct  59   AGATTGAGAAAAATGTGTAGAGGCTTGA---ATAAT---GAAGAGAGCAGAAGAAGTGAC  112

Query  73   GG-TGATGGTTGCCGGAGTCTTTGCACGAGACCGAGTGTTCCGGTTAGGTGTGAGCTTTG  131
            ||  || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  113  GGAGGA-GGTTGCCGGAGTCTCTGCACGAGACCGAGTGTTCCGGTAAGGTGTGAGCTTTG  171

Query  132  TGGCGGCGATGCCTCCGTGTTCTGTGAGGCTGACTCGGCGTTTCTCTGTAGAAAATGTGA  191
             | ||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct  172  CGACGGAGACGCCTCCGTGTTCTGTGAAGCGGACTCGGCGTTCCTCTGTAGAAAATGTGA  231

Query  192  CCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCAC  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  CCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCAC  291

Query  252  TTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTT  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  TTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTT  351

Query  312  ACCGTCGGTGACGACGGTGGGAGAAGCCACCGTGGAGAGTAGAAGTGAACAAGATAATCA  371
            |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||
Sbjct  352  ACCGTCGGTGACGACGGTCGGAGAAACCACCGTGGAGAATAGAAGTGAACAAGATAATCA  411

Query  372  TGAGGTTCCGTTTGTGTTTCTCTGAtttttagtttttttttGGTG  416
            ||||||||||||||| ||||||||||| |||| ||||||| ||||
Sbjct  412  TGAGGTTCCGTTTGTTTTTCTCTGATTATTAGATTTTTTT-GGTG  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19704957608


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5