BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930202 Length=251 Score E Sequences producing significant alignments: (Bits) Value AT3G22231.1 | Symbols: PCC1 | pathogen and circadian controlled... 237 4e-62 AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 237 4e-62 > AT3G22231.1 | Symbols: PCC1 | pathogen and circadian controlled 1 | chr3:7845823-7846605 REVERSE LENGTH=545 Length=545 Score = 237 bits (128), Expect = 4e-62 Identities = 160/175 (91%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 3 TCCTCAGCTCCTCAAATCAGAATGACTCAATCCGAGCACAATTACTTTTCCGTGCAAAAA 62 ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| Sbjct 22 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCGTGCAAAAA 81 Query 63 CGTTCACAGATTTCATCAGGGCCGGACACAAGTCCGTCGCCGCCGATTGGTTATCCGACT 122 | |||| ||| ||||||||||||| |||||||| | |||| || ||||||||||||||| Sbjct 82 CCTTCAGAGACTTCATCAGGGCCGTACACAAGT-C--CGCCACCAATTGGTTATCCGACT 138 Query 123 AGAGATCCGGTGGTCGGTGATCCTCCGGCAGCAGCAGTGGAGACAAAGTCCAAGG 177 |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 139 AGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCCAAGG 193 > AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein match is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1); Has 122 Blast hits to 122 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7854419-7855791 REVERSE LENGTH=670 Length=670 Score = 237 bits (128), Expect = 4e-62 Identities = 160/175 (91%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 3 TCCTCAGCTCCTCAAATCAGAATGACTCAATCCGAGCACAATTACTTTTCCGTGCAAAAA 62 ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| Sbjct 157 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCGTGCAAAAA 216 Query 63 CGTTCACAGATTTCATCAGGGCCGGACACAAGTCCGTCGCCGCCGATTGGTTATCCGACT 122 | |||| ||| ||||||||||||| |||||||| | |||| || ||||||||||||||| Sbjct 217 CCTTCAGAGACTTCATCAGGGCCGTACACAAGT-C--CGCCACCAATTGGTTATCCGACT 273 Query 123 AGAGATCCGGTGGTCGGTGATCCTCCGGCAGCAGCAGTGGAGACAAAGTCCAAGG 177 |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 274 AGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCCAAGG 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11410779023 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5