BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930269
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22750.1 | Symbols: | Protein kinase superfamily protein | ... 1947 0.0
> AT3G22750.1 | Symbols: | Protein kinase superfamily protein
| chr3:8037216-8039903 REVERSE LENGTH=2092
Length=2092
Score = 1947 bits (1054), Expect = 0.0
Identities = 1131/1169 (97%), Gaps = 1/1169 (0%)
Strand=Plus/Plus
Query 6 AAGaaaaaaaaaGAGATGGAAACAAGAAACGAGACAAAAGCTTCACCGGAAAACAACCTC 65
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AAGAAAAAAAGAGAGATGGAAACAAGAAACGAGACAAAAGCTTCACCGGAAAACAACCTC 852
Query 66 AGAAACAGAGGAGCTGTTGGAAACAACAGCAAGAAAGACATGATTTTTCGAGCTGATAAG 125
|||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 853 AGAAACAGAGGAGCTGATGGAAACAATAGCAAGAAAGACATGATTTTCCGAGCTGATAAG 912
Query 126 ATTGATTTGAAGAATTTGGACATCCAGCTAGAGAAACATCTGAGTAGGGTTTGGTCAAGA 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 913 ATTGATTTGAAGAATTTGGATATCCAGCTAGAGAAACATCTGAGTAGGGTTTGGTCAAGA 972
Query 186 AGCATTGAGAAGCACCCTAAGCCTAAGGAGGAATGGGAAATTGAATTGGCTAAATTGGAG 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 973 AGCATTGAGAAGCACCCTAAGCCTAAGGAGGAATGGGAAATTGAATTGGCTAAATTAGAG 1032
Query 246 ATGAGGAATGTCATTGCTCGTGGTGCTTATGGTATTGTTTACAAAGGCATCTATGATGGT 305
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1033 ATGAGGAATGTCATTGCTCGTGGTGCTTATGGTATTGTCTACAAAGGCATATATGATGGT 1092
Query 306 CAAGATGTTGCTGTGAAAGTGCTTGATTGGGGAGAAGATGGTTACGCGACAACGGCTGAG 365
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CAAGATGTTGCTGTGAAAGTACTTGATTGGGGAGAAGATGGTTACGCGACAACGGCTGAG 1152
Query 366 ACATCCGCTTTACGTGCTTCATTTCGTCAAGAAGTTGCGGTTTGGCACAAACTTGACCAT 425
||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1153 ACATCTGCTCTACGTGCTTCATTTCGTCAAGAAGTTGCGGTTTGGCATAAGCTTGACCAT 1212
Query 426 CCTAATGTCACAAGGTTTGTGGGAGCATCAATGGGAACAACGAATTTGAAAATACCTTCA 485
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1213 CCTAATGTCACAAGGTTTGTGGGAGCATCAATGGGAACAGCGAATTTGAAGATACCTTCA 1272
Query 486 TCAGCTGAGACGGAGAATTCGTTGCCTCAGCGAGCTTGTTGTGTTGTTGTGGAGTATATT 545
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1273 TCAGCTGAGACGGAGAACTCGTTGCCTCAACGAGCTTGTTGTGTCGTTGTGGAGTATATC 1332
Query 546 CCTGGAGGAACTCTTAAGCAGTATTTGTTCCGTAACAGGCGAAAGAAACTCGCTTTTAAA 605
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1333 CCTGGAGGAACTCTTAAGCAGTATTTGTTCCGAAACAGGCGAAAGAAACTCGCTTTTAAA 1392
Query 606 GTCGTGGTTCAACTCGCTCTCGATCTTTCTAGAGGGCTAAGTTATTTGCATTCAGAGAGG 665
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1393 GTCGTGGTTCAACTCGCTCTCGATCTCTCCCGAGGGTTAAGTTATTTGCATTCAGAGAGG 1452
Query 666 ATTGTTCATCGCGATGTCAAAACAGAGAATATGCTTTTGGATTATCAGAGGAATCTAAAG 725
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 ATTGTTCATCGCGATGTGAAAACAGAGAATATGCTTTTGGATTATCAGAGGAATCTAAAG 1512
Query 726 ATTGCTGATTTTGGAGTAGCTAGAGTTGAAGCTCAGAATCCAAAAGACATGACTGGAGAA 785
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 ATTGCTGATTTTGGGGTTGCTAGAGTTGAAGCTCAGAATCCAAAAGACATGACTGGAGAA 1572
Query 786 ACTGGAACTCTTGGATACATGGCTCCAGAGGTTCTTGATGGTAAGCCATACAACAGAAGA 845
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1573 ACTGGAACTCTTGGATACATGGCTCCAGAGGTTCTTGATGGCAAGCCATACAACAGAAGA 1632
Query 846 TGCGATGTTTACAGCTTTGGGATATGCTTGTGGGAGATTTATTGTTGTGATATGCCTTAT 905
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TGTGATGTTTACAGCTTTGGGATATGCTTGTGGGAGATTTATTGTTGTGATATGCCTTAT 1692
Query 906 CCTGATCTCAGCTTTGCTGATGTTTCTTCTGCTGTTGTTCGTCAGAATTTGAGACCGGAT 965
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1693 CCTGATCTCAGCTTTGCTGATGTTTCTTCTGCTGTTGTTCGTCAGAATCTGAGACCGGAT 1752
Query 966 ATTCCAAGATGTTGTCCAACATCATTGGCGACCATAATGAAGAGATGTTGGGAAGCTAAT 1025
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1753 ATTCCAAGATGTTGTCCAACAGCATTGGCGACCATAATGAAGAGATGTTGGGAAGCTAAT 1812
Query 1026 CCGGAGAAACGACCGGAGATGGAGGAAGTGGTGAGGTTGCTTGAAGCTGTCGACACCTCC 1085
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1813 CCGGAGAAACGACCAGAGATGGAGGAAGTTGTGAGTTTGCTTGAAGCTGTCGACACCACC 1872
Query 1086 AAAGGCGGTGGAATGATCCCGGAAGATCAGAGACCTGCCTGTTTCTGCTTTGTCTCTGGT 1145
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1873 AAAGGCGGTGGAATGATCCCGGAAGATCAGAGACCTGGCTGTTTCTGCTTTGTCTCTGGT 1932
Query 1146 CGTGGTCCCTAAATTTACCCCC-CTCTCT 1173
|||||||||||| ||||||||| ||||||
Sbjct 1933 CGTGGTCCCTAATTTTACCCCCTCTCTCT 1961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57780827295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5