BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930314
Length=2666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | ... 4093 0.0
> AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A
| chr3:8203469-8207419 FORWARD LENGTH=2901
Length=2901
Score = 4093 bits (2216), Expect = 0.0
Identities = 2547/2699 (94%), Gaps = 53/2699 (2%)
Strand=Plus/Plus
Query 1 TTTCTCTGTGAATAAACCCATCAATGGCGATGAAACCCAGTCTCCATTTTTACCCAACTA 60
||||| |||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 58 TTTCTATGTGAATAAA-CCAACAATGGCGATGAAGCCCAGTCTCCATTTTTGCCCAACTA 116
Query 61 CTGTCACGAAGAAGTTTGTCTACTCGTTTCAAAGCTCCTTCTGCTCCCGTTTCATAAGGT 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 117 CTGTCACGAAGAAGTTTGTCTACTCGTTTCAAAGCTCCTTCTGCTTCCGTTTCTTAAGGT 176
Query 121 ATAGTTCATCAATTTCAATTGGGTCTTGTAAAGGTGTTGTCTTTAGTTCGAGAAATTATC 180
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 177 ATAGTTCATCAATTTCACTTGGGTCTTGTAAAGGTGTTACCTTTAGTTCGAGAAATGATC 236
Query 181 AAATTCCATCGAGGAGGTTTAGCTTTAGTAGGGATGGTAATAATGGTGAGTGGTTAGAGA 240
||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 237 AAATTGCATCGAGGAGGTTTAGCTTTAGTAGGGATTGTAATAATGGTGTGTGGCTAGAGA 296
Query 241 ATTGGAATAGAATTCAGAAACGTAATCAACCTAAACCACCAAAGGTAGTTGTGAATTATC 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 ATTGGAATAGAATTCAGAAACGTAATCAACCTAAACCTCCAAAGGTAGTTGTGAATTATC 356
Query 301 GAAAAGAA--G-GA-----------GG-GATTGTGAGTGGTGATGATAATAGTAGTAGAG 345
|||||||| | || || |||||||||||||||||||||||| |||||||
Sbjct 357 GAAAAGAAGGGAGATTTTCTGGGTCGGAGATTGTGAGTGGTGATGATAATAGAAGTAGAG 416
Query 346 ATGGTGATGGTAGTACAATGGAGAAGATTGTGGAGAAATTGAAGAAGTATGGATATATGG 405
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 417 ATGGTGATGGTAGTACTATGGAGAAGATAGTGGAGAAATTGAAGAAATATGGATATAT-- 474
Query 406 AGAAGGGTGAGGAGGTTCAGAGTAAAGAGATTGAACAAGAGAGAAGGATTGAGAAAGGGT 465
| ||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 475 ------G-GAGGAGGTTCAGAATAAGGAGATTGAACAAGAGAGAAGGATTGAGAAAGGAT 527
Query 466 CGGTGGAGGATATATTTTATGTTGAGGAAGGGAATTTACCGAATACTAGAGGTGGATTCA 525
| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 528 CTGTGGAGGATATATTCTATGTTGAAGAAGGGAAGTTACCGAATACTAGAGGTGGATTCA 587
Query 526 CTGAGGAATCGTTACTTGGTAGAGATG-ATGTCTTTGGAAGTAATGGAGAAGTTGGTTTT 584
|||||||||||||||||||| |||| | ||||| |||||||||||||||| |||||||||
Sbjct 588 CTGAGGAATCGTTACTTGGTGGAGA-GAATGTCATTGGAAGTAATGGAGATGTTGGTTTT 646
Query 585 ACTTGGGAGAAGATGAGTGCCAAGGAGAAGAAGGAGTTGGAAGCAGAGTGGACTGCGAAG 644
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||
Sbjct 647 CCTTGGGAGAAGATGAGTGCTAAGGAGAAGAAGGAGTTGGAAGCTGAGTGGACCGCAAAG 706
Query 645 AAGGAGAATAGATACTCGCTT-GCGGAAATGACTCTTCCGGAATCAGAGCTAAGGAGGTT 703
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 707 AAGGAGAATAGATACTCG-TTGGCGGAAATGACTCTTCCGGAATCAGAGCTAAGGAGGTT 765
Query 704 GAGGAATTTGACGTTTCGAACAGCGAGCAAGATGAGGATTCGGGGTGGAGGTGTGACTCA 763
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 766 GAGGAATTTGACGTTTAGAACAGCGAGCAAGATGAGGATTCGAGGTGGAGGTGTGACTCA 825
Query 764 GGTGGCAGTGGATGCTATTAAGGAGAAGTGGAAAAGCGCAGAGATTGTGAGATTGAAGAT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GGTGGCAGTGGATGCTATTAAGGAGAAGTGGAAAAGCGCAGAGATTGTGAGATTGAAGAT 885
Query 824 TGAAGGAGCAAGCGCGCTTAACATGAGAAAGATGCATGAGATATTAGAGaaaaaaaCTGG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TGAAGGAGCAAGCGCGCTTAACATGAGAAAGATGCATGAGATATTAGAGAAAAAAACTGG 945
Query 884 TGGTTTAGTGATTTGGAGGTCCGGGACTTCCATCTCTTTGTACAGAGGTGTCAGTTATGA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGGTTTAGTGATTTGGAGGTCCGGGACTTCCATCTCTTTGTACAGAGGTGTCAGTTATGA 1005
Query 944 GCTTCCATCAGGAAAATGGAACAAGCAAAGAAGAGAAGAGACGCCACCT---TCT-TCCT 999
|||||||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 1006 GCTTCCATCAGGAAAATGGAACAAGCAAAGAAGAGAGGAGACGCCACCTGAAGCTGTAAT 1065
Query 1000 ----TACC-T---GAAACTACAACTATGGTGGATAATAGTGATGAAAAAGTTCATCTTCC 1051
||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1066 AGAGAACCATGACGAAACTACAACTATGGTGGATAAAAGTGATGAAAAAGTTCATCTTCC 1125
Query 1052 TCAATTAGAGCAGGAGACAACTAGTGTGGAAAAGAAAGACCAGACATCTCAACCAGAAGT 1111
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1126 TCAATTAGAGCAGGAGACAACTAGTGTGGAAAAGAAAGACCAGACATCT---CCAGTAGT 1182
Query 1112 AGAATACGAAGATGAAATTGATAAACTGTTAGATGGTCTTGGTCCTAGATTCATGGACTG 1171
|||||| ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||
Sbjct 1183 AGAATATGAAGATGAACTTGATGAACTGTTAGATGATCTTGGTCCTAGGTTCATGGACTG 1242
Query 1172 GCCGGGAGATAATCCATTACCTGTAGATGCTGATTTGCTTCCAGGCGCCATTCCTGGTTA 1231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1243 GCCGGGAGATAATCCATTACCTGTAGATGCTGATTTGCTTCCAGGCGCCATTCCTGATTA 1302
Query 1232 TGAACCACCTTTCAGGGTACTTCCTTATGGAGTAAGATCATCTCTGGGACCAAAGGAGGC 1291
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TGAACCGCCTTTCAGGGTACTTCCTTATGGAGTAAGATCATCTCTGGGACCAAAGGAGGC 1362
Query 1292 AACAGCTTTGAGAAGACTTGCCAGATCTATTCCTCCACACTTTGCTTTAGGTCGAAGTAG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 AACAGCTTTGAGAAGACTTGCCAGATCTATTCCTCCACACTTTGCTTTAGGTCGAAGTAG 1422
Query 1352 GCAGCTCCAAGGCTTGGCGACAGCAATGGTCAGGTTATGGGAAAAGAGTATGCTTGCAAA 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GCAGCTCCAAGGCTTGGCGACAGCAATGGTCAGGTTATGGGAAAAGAGTATGCTTGCAAA 1482
Query 1412 AATTGCTATTAAACGTGGCGTGCAATCAACTACCAGTGAGAGAATGGCTGAAGATCTCAA 1471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GATTGCTATTAAACGTGGCGTGCAATCAACTACCAGTGAGAGAATGGCTGAAGATCTCAA 1542
Query 1472 GAAATTGACAGGAGGTATAATGCTCTCTAGGAACAAAGATTTCTTGGTTTTCTACAGAGG 1531
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1543 GAAATTGACAGGAGGTATAATGCTCTCTAGGAATAAAGACTTCTTGGTTTTCTACAGAGG 1602
Query 1532 AAAGAATTTTTTGTCACGAGAAGTAGCTGACGCATTGGTGGAGCAGGAGAGGTTTGCAAG 1591
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1603 AAAGAATTTTTTATCAAGAGAAGTAGCTGACGCATTGGTGGAGCAGGAGAGGTTTGTAAG 1662
Query 1592 GACTTTGCAAGACGAAGAAGAACAGGCACGTTTGAGAGGTTCATCGGCTCTGATTGTCCC 1651
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1663 GACTTTGCAAGACGAAGAAGAGCAGGCACGTTTAAGAGGTTCATCGGCTCTGATTGTCCC 1722
Query 1652 ATGTATTGAACCTGCGAAAAAACTTGTTTCTGCTGGTACTCTTGGTGAAACTCTTGATGC 1711
| ||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 AAGTACTGAACCTGCTAATAAACTTGTTTCTGCTGGTACTCTTGGTGAAACTCTTGATGC 1782
Query 1712 GACTGGTAAGTGGGGAAAGAATCTGGACGATGATGATCATTCCGACGAAGTGAAACAAGA 1771
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1783 GACTGGTAAGTGGGGAAAGAATCTGGACGATGATGATCATTCAGACGAAGTGAAACAAGA 1842
Query 1772 GGTTGAGATATTGAGGCATGAAAATCTTGTCAGGAAGCTGGAAAGGAAACTTGCTTTTGC 1831
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1843 GGTTGAGATATTGAGACATGAGAATCTTGTCAGGAAACTGGAAAGGAAACTTGCTTTTGC 1902
Query 1832 TGAGAGAAAGCTGTTGAAAGCTGAACGTGGTTTGGCTAAGGTGGAAGAGTGTCTTAAGCC 1891
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1903 TGAGAGAAAGCTGTTGAAAGCCGAACGTGGTTTGGCTAAGGTGGAAGTGTGTCTTAAGCC 1962
Query 1892 TGCGGAGCAGAGAGAAGACCCAGAAAGCATAACTGATGAAGAGAGATTTATGTTCCGCAA 1951
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 CGCAGAGCAGAGAGAAGATCCAGAAAGCATAACTGATGAAGAGAGATTTATGTTCCGCAA 2022
Query 1952 GCTTGGCTTGAAAATGAAAGCTTTCTTACTTCTAGGTAGGCGAGGAGTTTTTGATGGTAC 2011
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2023 GCTTGGCTTGAAAATGAAAGCTTTCTTACTTCTAGGTAGGCGAGGAGTGTTTGATGGTAC 2082
Query 2012 GGTGGAGAACATGCACTTGCACTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGC 2071
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2083 AGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGC 2142
Query 2072 TAAAACTTTTGACGGTGTAAAGAAAGTGGCATTAGCCCTTGAAGCCGAGAGTGGTGGTAT 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TAAAACTTTTGACGGTGTAAAGAAAGTGGCATTAGCCCTTGAAGCCGAGAGTGGTGGTAT 2202
Query 2132 CCTGGTTTCTATTGACAAGGTTACCAAAGGATATGCCATTATCGTGTACAGAGGGCAAGA 2191
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2203 CCTGGTTTCTATTGACAAGGTTACCAAAGGATATGCCATTATCGTGTACAGAGGACAAGA 2262
Query 2192 CTATAAGCGTCCTACCATGTTGAGGCCGAAAAATCTTTTGACAAAGAGGAAGGCTTTAGC 2251
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2263 CTATAAGCGTCCTACCATGTTGAGACCGAAAAATCTTTTGACAAAGAGGAAGGCTTTAGC 2322
Query 2252 GCGTTCCATTGAGCTCCAAAGACGCGAGGGTCTTCTGAAGCACATTTCTACGATGCAGGC 2311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323 GCGTTCCATTGAGCTCCAAAGACGCGAGGGTCTTCTGAAGCACATTTCTACGATGCAGGC 2382
Query 2312 GAAAGCAGAACAGCTGAGAGTTGAAATTGAACAAATGGAGAAGGTAACAGACAAGGGTGA 2371
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2383 GAAAGCAAAACAGCTGAGAGCTGAAATTGAACAAATGGAGAAGGTAACAGACAAGGGTGA 2442
Query 2372 TGAAGAGTTATACAACAAGCTTGATGTGGCTTATGCTTCTAGCGATGAGGAGACAGACGG 2431
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2443 TGAAGAGTTATACAACAAGCTTGATATGGCTTATGCTTCTAGCGATGAGGAGACAGACGA 2502
Query 2432 AGAAGA--A-GATGATGCATTTCCAGAGACATATGCAGAAGGAGAAGATGGTGA-GATTC 2487
|||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2503 AGAAGATGATGATGATGCATTTCCAGAGACGTATGCAGAAGGAGAAGATGGTGAAGAAGG 2562
Query 2488 T-AG---C-AGAAGGGGAACTATCTGAAACAGAGGATGAAGACTGGGATTCAAATGAATC 2542
| || | || ||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 2563 TGAGATTCTAGCAGGGGAACTATCTGAAACAGAGGATAAAGATTTGGATTCAAATGAATC 2622
Query 2543 GGAAACCGGATTTGGTGATGATTCTGTACTTTACACAGAGGATCTTCATACAAAACCAGA 2602
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||
Sbjct 2623 GGAAACCGGATTTGGTGATGATTCTGTACTTTTCGCAGAGGATCTTCATACGAAATCAGA 2682
Query 2603 AGATTTACCGAGTGAGAAAGTTCATCTGCAGCATCAGAGCTAATTGAAGATAAACGTAA 2661
||||||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 2683 AGATTTACCAAACAAGAAAGTTCGTCTGCAGCATCAGAGCTAATTGACGATAAGCGTAA 2741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132390562577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5