BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930405

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23670.1 | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-asso...   200    1e-50


> AT3G23670.1 | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-associated 
kinesin-related protein, putative | chr3:8519164-8525289 
FORWARD LENGTH=4302
Length=4302

 Score =  200 bits (108),  Expect = 1e-50
 Identities = 206/250 (82%), Gaps = 20/250 (8%)
 Strand=Plus/Plus

Query  237   GAG-AGGCATGGACGATGTTGAAAAAGCAGCAGCCAGAGTAGGAGTCAAAGGACCAGAGT  295
             ||| ||| || || |||||  ||||||||||||| ||||  |||||||| ||| | ||||
Sbjct  3512  GAGAAGGAATAGATGATGTCAAAAAAGCAGCAGCAAGAGCCGGAGTCAAGGGAGCTGAGT  3571

Query  296   -TAAGATTCATAAA--CACTTGCAACAGAAACTTCAGCTTAGAAGGTGC-AAG-CA-AA-  348
              | |||||||||||  |||||||| |||||| |||||||| |||||||| |||  | || 
Sbjct  3572  CT-AGATTCATAAACGCACTTGCAGCAGAAATTTCAGCTTTGAAGGTGCAAAGAGAGAAG  3630

Query  349   GA-G-A-G--A----A-GGACTGAGAACAAGAGTCTCCAGTCACAACTAAGAGACACAGC  398
             || | | |  |    | ||| ||| ||||||||||||||||||||||||||||| || ||
Sbjct  3631  GAGGTACGATACTTCAGGGA-TGAAAACAAGAGTCTCCAGTCACAACTAAGAGATACTGC  3689

Query  399   TGAAGATGTTCAAGCAGCAGGAGAGTTGCTTGTTCGACTTAAAGAAGCTGAAGAATGATT  458
             ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct  3690  TGAAGCTGTTCAAGCAGCAGGAGAGTTACTTGTTCGATTTAAAGAAGCTGAAGAAGGATT  3749

Query  459   GAAAATTGCA  468
             || | |||||
Sbjct  3750  GACATTTGCA  3759



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5