BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930439
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23820.1 | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 |... 2348 0.0
> AT3G23820.1 | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6
| chr3:8603444-8605462 FORWARD LENGTH=2019
Length=2019
Score = 2348 bits (1271), Expect = 0.0
Identities = 1369/1416 (97%), Gaps = 7/1416 (0%)
Strand=Plus/Plus
Query 4 TTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAA 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAA 242
Query 64 GCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTC 302
Query 124 TTCTAAAGTTCTTTTCCGAGCAACGCTCCTCGTAGCTCTTGTCCTCGTCCTCCTCTTCGC 183
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 303 TTCTAAAGTTCTTTTCCGAGCAACGCTTCTCGTAGCTCTTGTCCTCGTCCTCATCTTCGC 362
Query 184 TATCAACTACCCTCCACTCTCCGACAGCCGCGCCGCCGCGGCACACCACCTCCACCGTCG 243
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 363 CATCAACTACCCTCCACTCTCCGATAGCCGCGCCGCCGCAGCACACCACCTCCACCGTCG 422
Query 244 TAGCTTCTTATCCACCGGActcttctcctcctcttcctcttcctcctcctctATCGGTGG 303
||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 423 TAGCTTCTTATCCACCGGACTCTTCTCCTCCTC--C-TCTTCTTCCTCCTCTATCGGTGG 479
Query 304 AGCCGCGTGGGAAAAGCGCGTCAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTC 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCCGCGTGGGAAAAGCGCGTTAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTC 539
Query 364 CGTCCTAGTCACCGGAGCTGCCGGCTTTGTCGGATCCCACTGCTCACTTGCTCTACGAAA 423
|||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||
Sbjct 540 CGTCCTAGTCACCGGAGCTGCCGGATTCGTCGGATCCCACTGCTCACTTGCGCTGCGAAA 599
Query 424 ACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTACGACCCATCACTCAA 483
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 ACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTATGACCCATCACTCAA 659
Query 484 AAGAGCAAGACAAGAGCTCTTAGAGAAGCAACAAGTGTTCATCGTCGAAGGTGATCTCAA 543
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AAGAGCAAGACAAGAGCTCTTGGAGAAACAACAAGTGTTCATCGTCGAAGGTGATCTCAA 719
Query 544 CGATGGACCACTCTTACGTAAACTCTTCGATGTTGTTCCTTTCACTCACATCCTTCACTT 603
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 720 CGATGGACCACTCTTACGTAAACTCTTCGACGTTGTCCCTTTCACTCACATCCTTCACTT 779
Query 604 AGCCGCTCAAGCCGGAGTACGCTACGCTATGAAAAACCCTCAGTCCTACATCGCATCCAA 663
||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 780 AGCCGCTCAAGCCGGAGTACGTTACGCTATGAAAAACCCTCAATCTTACATCGCCTCCAA 839
Query 664 CATCGCCGGATTCGTTAACCTCCTTGAAGTGGCTAAAGCAGCTAATCCTCAACCTGCGAT 723
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 840 CATCGCCGGATTCGTTAACCTTCTTGAAGTGGCTAAAGCAGCTAATCCACAACCTGCGAT 899
Query 724 TGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGA 959
Query 784 ACACAGAACAGACCAACCAGCAAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGAT 843
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACACCGAACAGACCAACCAGCGAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGAT 1019
Query 844 CGCACATACTTACAACCACATCTACGGTCTCTCTTTAACCGGACTCCGGTT-TTTCACGG 902
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 1020 CGCACATACTTACAACCACATCTACGGTCTCTCCTTAACCGGACTCCGGTTCTTT-ACGG 1078
Query 903 TTTACGGTCCTTGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCC 962
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTACGGTCCATGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCC 1138
Query 963 ACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCA 1198
Query 1023 CATACATCGACGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCGGAGAAAAGTA 1082
| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1199 CCTACATCGATGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCTGAGAAAAGCA 1258
Query 1083 CCGGAAGCGGTGGAAAGAAGCGAGGACAAGCTCAACTACGTGTTTACAATCTTGGAAACA 1142
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1259 CCGGAAGCGGCGGAAAGAAGCGAGGACAAGCTCAGCTACGTGTTTACAATCTAGGAAACA 1318
Query 1143 CGTCTCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAG 1202
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGTCCCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAG 1378
Query 1203 CAAAGAAACATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATG 1262
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTAAGAAGCATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATG 1438
Query 1263 TGAGTTTAGCGTATAAAGATTTCGGATACAAACCCACGACGGATCTCGCGGCGGGGCTGA 1322
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1439 TGAGTTTAGCGTATAAAGATTTCGGGTACAAACCGACGACGGATCTCGCGGCGGGGCTGA 1498
Query 1323 GGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATACAGCCGAGGGTAAAAAAGGAAA 1382
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1499 GGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATTCAGCCGAGGGTAAAAAAGGAAA 1558
Query 1383 ACTT-TCACGCCGAAGGTTCCGCTTAATAATTTTCT 1417
||| ||||||||||| |||||||||||||||||||
Sbjct 1559 -CTTCTCACGCCGAAGATTCCGCTTAATAATTTTCT 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5