BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930446 Length=2998 Score E Sequences producing significant alignments: (Bits) Value AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containin... 4911 0.0 AT3G23910.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 172 1e-41 AT3G24255.1 | Symbols: | RNA-directed DNA polymerase (reverse ... 172 1e-41 > AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:8631606-8636045 REVERSE LENGTH=3417 Length=3417 Score = 4911 bits (2659), Expect = 0.0 Identities = 2890/3002 (96%), Gaps = 14/3002 (0%) Strand=Plus/Plus Query 4 GGTACTTTATTGTT-TCAATGGCTTCAGATCGTGGTTCT---GCTGCTGCTGGTAAGCCC 59 |||||||||| ||| | |||||||||||||||||||||| ||| ||| |||||||||| Sbjct 177 GGTACTTTATAGTTGT-AATGGCTTCAGATCGTGGTTCTGCAGCTTCTGGTGGTAAGCCC 235 Query 60 TTTTGGATGAAACATGCGGAAGATGCAAAAATCAAAGACGAAGGAGAGAAAGACGCTGCG 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 ATTTGGATGAAACATGCGGAAGATGCAAAAATCAAAGACGAAGGAGAGAAAGACGCTGCG 295 Query 120 GCTAAAGCAGCTTTTGAAGCTACATTCAAAGGTGTAGACCAAACTACACATTTGATTGAA 179 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 GCAAAAGCAGCTTTTGAAGCTACATTCAAAGGTGTAGACCAAACTACACATTTGATTGAA 355 Query 180 GCTGTTGCACCGGCACCGGAATCTGCACCGGAATCTGATAGTGATTC---tgatgatgat 236 |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 356 CCTGTTGCACCGGTACCGGAATCCGCACCGGAATCTGATAGTGATTCAGATGATGATGAT 415 Query 237 gatgatgaATCTGATTACTTGTCTAGGAAACCAATTGGTCCTGTGGATCCGAGTAAGTCT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GATGATGAATCTGATTACTTGTCTAGGAAACCAATTGGTCCTGTGGATCCGAGTAAGTCT 475 Query 297 ACAGCTTCTGGTGCTGGTATTGGTGGTGGAACGGCTTGTGTTCCGTCTACTTTTGTTGTT 356 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 476 ACAGCTTCTGGTGCTGGTATTGGTGGTGGAACGGCTTGTGTTCCGTCTACGTTTGTTGTT 535 Query 357 GTAACTAAGGATTCTGATGGGAGGAAAGTTCCTAATGGTGGAGCTTTGATTAGAGTTAGA 416 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 536 GTAACTAAGGATTCTGATGGGAGGAAAGTTCCAAATGGTGGAGCTTTGATTAGAGTTAAA 595 Query 417 GTGTGTCCTGGTGTTGGTGTTGGTGGTACTGATCAAGAAGGTGTTGTTAAAGATGTTGGT 476 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 596 GTGTCTCCTGGTGTTGGTGTTGGTGGTACTGATCAAGAAGGTGTGGTTAAAGATGTTGGT 655 Query 477 GATGGGAGTTATGCTGTTACTTATGTTGTGCCTAAGAGAGGAAACTATATGGTTAATATT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GATGGGAGTTATGCTGTTACTTATGTTGTGCCTAAGAGAGGAAACTATATGGTTAATATT 715 Query 537 GAATGCAATGGGAGTGCTATCATGGGAAGTCCCTTTCCTGTCTTCTTTAGCCAAGGGTCT 596 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 GAATGCAATGGGAATGCTATCATGGGAAGTCCCTTTCCTGTCTTCTTTAGCCAAGGGTCT 775 Query 597 TCTTCGACTGGATTGATGGGTTCTGCTCCAGCTTCATACTCGAATCTTATAAATCAAACC 656 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TCTTCTACTGGACTGATGGGTTCTGCTCCAGCTTCATACTCGAATCTTATAAATCAAACA 835 Query 657 ATGCCAAACATGCCTAATTACACTGGTTCTGTTTCGGGTGCTTTCCCGGGGCTGTTGGGA 716 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 836 ATGCCAAACATGCCTAATTACACTGGTTCTGTTTCGGGTGCTTTCCCGGGGTTGTTGGGG 895 Query 717 ATGGTTCCAGGCATTGCATCTGGTCCTTCAGGTGGTGCTATTTTGCCTGGAGTTGGAGCT 776 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 ATGGTTCCAGGGATTGCATCTGGTCCTTCAGGTGGTGCTATTTTGCCTGGAGTTGGAGCT 955 Query 777 TCGCTTGGGGAAGTCTGTCGGGAATATCTTAATGGTAGATGTGTGAACTCTATGTGCAAG 836 || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 956 TCACTTGGGGAAGTTTGTCGAGAATATCTTAATGGTAGATGTGTGAACTCTATGTGCAAG 1015 Query 837 TTAAACCACCCTCCTCAGAATCTGCTGATGACTGCTATAGCTGCAACGACAAGTATGGGT 896 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1016 TTAAACCACCCTCCTCAGAATTTGCTGATGACTGCTATAGCTGCAACGACAAGTATGGGT 1075 Query 897 AATATGAGTCAGGTGCCTATGGCACCTTCTGCTGCAGCAATGGCTGCTGCACAGGCCATT 956 || | ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct 1076 AACCTTAGTCAGGTGCCTATGGCTCCTTCTGCTGCTGCAATGGCTGCTGCGCAGGCTATT 1135 Query 957 GTTGCCGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAAC 1016 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAAC 1195 Query 1017 AAGGGATCTTTAGGTTCCCCAGAAAAAGGAGATAACGGGGATTCATTGAAGAAATTTCTC 1076 |||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct 1196 AAGGGATCTTTAGGTTCCCCAGAAAAAGGAGAAAACGGGGA-T--TTGAAGAAATTTCTC 1252 Query 1077 CAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAGCTTC 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 CAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAGCTTC 1312 Query 1137 TGTGGCACAGTAGTTGACTGTAGTATAACTGATTCAAAGCATCTTGCCTACATAGAATAC 1196 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1313 TGTGGCACAGTAGTTGACTGTAGTATAACTGATTCAAAGCATATCGCCTACATAGAATAC 1372 Query 1197 TCGAATTCCGAAGAAGCAACAGCTGCTTTGGCATTAAACAATACGGAAGTCTTTGGTAGA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 TCGAATTCCGAAGAAGCAACAGCTGCTTTGGCATTAAACAATACGGAAGTCTTTGGTAGA 1432 Query 1257 CCATTGAATGTTGAGATTGCAAAATCGCTACCTCACAAACCATCTTCAAATAATTCTTCG 1316 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 GCATTGAATGTTGAGATTGCAAAATCGCTACCTCACAAACCATCTTCAAATAATTCTTCG 1492 Query 1317 TCCTCACTACCACTGATGATGCAACAGGCCGTCGCGATGCAGCAGATGCAATTCCAACAG 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1493 TCCTCACTACCACTGATGATGCAACAGGCCGTCGCGATGCAGCAGATGCAATTCCAGCAG 1552 Query 1377 GCTATACTAATGCAACAAGCCGTGGCTACTCAGCAGGCAGCAAATAGAGCTGCCACAATG 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 GCTATACTAATGCAACAAGCCGTGGCTACTCAGCAGGCAGCAAATAGAGCTGCCACAATG 1612 Query 1437 AAGTCTGCCACTGAGCTTGCAGCAGCTAGAGCTGCAGAGATAAGTAGGAAACTGAGACCT 1496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 AAGTCTGCCACTGAGCTTGCAGCAGCTAGAGCTGCAGAGATAAGTAGGAAACTGAGACCT 1672 Query 1497 GATGGAGTTGGAAATGATGAAAAAGAAGCTGATCAGAAGTCTAGGTCACCATCTAAGTCT 1556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 GATGGAGTTGGAAATGATGAAAAAGAAGCTGATCAGAAGTCTAGGTCACCATCTAAGTCT 1732 Query 1557 CCTG---GGTCGAGATCAAAGTCAAAATCACCAATAAGTTACAGGCGCAGACGGAGATCT 1613 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1733 CCTGCAAGGTCGAGATCAAAGTCAAAATCACCAATAAGTTACAGGCGAAGACGGAGATCT 1792 Query 1614 CCATCCTATTCACCACCGTTTCGTCGCCCAAGAAATCATAGATCGAGATCACCATTAAGA 1673 ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1793 CCAACCTATTCACCACCGTTTCGTCGCCCAAGAAGTCACAGATCGAGATCACCATTAAGA 1852 Query 1674 TATCACCGGCGATCAACTTATGAAGGGAGAAGGCGGTCATATAGAGATTCTAGGGATATT 1733 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1853 TATCAACGGCGATCAACTTATGAAGGGAGAAGGCGGTCATATAGAGATTCTAGGGATATT 1912 Query 1734 TCTGAAAGTAGGAGATACGGTAGATCAGATGAACACTATTCTTCCAGTTCAAGGAGAAGT 1793 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1913 TCTGAAAGTAGGAGATACGGTAGATCAGATGAACACCATTCTTCTAGTTCAAGGAGAAGT 1972 Query 1794 AGGAGTGTAAGCCCTAAAAAGAGAAAATCTGGACAAGAAGATTCAGAGCTCTCAAGACAT 1853 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1973 AGGAGTGTAAGCCCTAAAAAGAGAAAATCTGGACAAGAAGATTCAGAGCTGTCAAGACTT 2032 Query 1854 CGACGTGATAGCTCATCACGTGGAGAGAAGAAATCATCTCGTGCTGGTTCACGATCACCG 1913 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2033 CGACGAGATAGCTCATCACGTGGAGAGAAGAAATCATCTCGTGCTGGTTCACGATCACCA 2092 Query 1914 AGGCGACGTAAGGAAGTTAAGTCAACCCCAAGAGATGATGAGGAAAACAAAGTGAAACGG 1973 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2093 AGGCGACGTAAGGAAGTTAAGTCAACCCCAAGAGATGATGAGGAAAACAAAGTGAAACGT 2152 Query 1974 AGAACACGTTCAAGATCTAGATCAGTGGAAGATTCTGCAGATATAAAGGATAAAGCTAGA 2033 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2153 AGAACACGTTCAAGATCTAGATCAGTGGAAGATTCTGCAGATATAAAGGATAAATCTAGA 2212 Query 2034 GATGAGGAATTGAAACATCACAAAAAGCGGTCAAGGTCAAGATCTCGTGAAGATAGGAGT 2093 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2213 GATGAGGAATTGAAACATCACAAAAAGCGGTCGAGGTCAAGATCTCGTGAAGATAGGAGT 2272 Query 2094 AAAACCAGAGACACATCTCGAAATTCTGATGAAACTAAACAGAAACACAGGGGGAGGTCT 2153 ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 2273 AAAACCAGAGACACATCTCGAAATTCTGATGAAGCTAAACAGAAACACCGGCAGAGGTCT 2332 Query 2154 AGGTCCAAATCATTAGAAAACGACAATGGTTCTGATGAGAATGTTGATGTTGCTCAAGAT 2213 ||||||| |||||| ||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 2333 AGGTCCAGATCATTGGAAAATGACAATGGATCTCATGAGAATGTTGATGTTGCTCAAGAC 2392 Query 2214 GGTGACCTGAATTCTCGTCACAGTAGGCGCAGGTCAAAATCATTGGACGAGGACTATGAT 2273 ||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2393 AATGATCTAAATTCCCGTCACAGTAAGCGCAGGTCAAAATCATTGGACGAGGACTATGAT 2452 Query 2274 ATGAAAGAGAGGAGGGGAAGGTCCAGGTCTAGATCATTGGAAACGAAAAAGAGGTCTTTT 2333 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | Sbjct 2453 ATGAAAGAGAGGAGGGGAAGGTCCAGGTCCAGATCATTGGAAACGAAAAACAGGTCTTCT 2512 Query 2334 GGGAAAAATAAGCTGGATGAAGACAGAAACACAGGATCACGTCGAAGGAGGTCCAGGTCA 2393 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2513 AGGAAGAATAAGCTGGATGAAGACAGAAACACAGGATCACGTCGAAGGAGGTCCAGGTCA 2572 Query 2394 AAATCAGTGGAAGGTAAGCGTAATTATAACAAGGAGACTCGGAGCAGGGACAAAAAGTCC 2453 |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| Sbjct 2573 AAATCAGTGGAAGGTAAGCGCAGTTATAACAAGGAGACTCGAAGCAGGGACAAAAAGTCC 2632 Query 2454 AAGCGTCGTAGTGGAAGACGGTCAAGGTCACCATCATCTGAGGGTAAGCAAGGGAGAGAT 2513 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2633 AAGCGTCGTAGTGGAAGACGGTCGAGGTCACCATCATCTGAGGGTAAGCAAGGGAGAGAT 2692 Query 2514 ATCAGGTCATCCCCTGGATATTCTGATGaaaaaaaaTCAAGACATAAGCGGCACTCCAGG 2573 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 2693 ATCAGGTCATCCCCTGGATATTCTGATGAAAAGAAATCAAGACATAAACGGCACTCCAGG 2752 Query 2574 TCAAGATCAACAGAGAAAAAGAACAGTTCAAGAGAAAAAAGGTCAAAACGTCATGAAAGA 2633 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2753 TCAAGATCAATAGAGAAAAAGAACAGTTCAAGAGATAAAAGGTCAAAACGTCATGAAAGA 2812 Query 2634 TTGCGGTCATCATCTCCTCTAGGCGACAAAAGACGGGGCGATAGATCATTATCTCCTGTT 2693 |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 2813 TTGCGGTCATCATCTCCTGGACGTGACAAAAGACGGGGCGATAGATCATTATCTCCTGTT 2872 Query 2694 AGTTCAGAAGATCATAAGATCAAGAAAAGACACTCTGGATCAAAATCTGTGAAAGAGAAA 2753 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2873 AGTTCAGAGGATCATAAGATCAAGAAAAGACACTCTGGATCAAAATCTGTGAAAGAGAAA 2932 Query 2754 CCCCGCTCAGATTATGAGAAAGTTGACTATGCAGATGCAAAATCAGATTCTAGTCGGCCG 2813 |||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||| || | Sbjct 2933 CCCCACTCAGATTATGAGAAAGTTGACGATGGAGATGCAAATTCAGATTCTAGTCAGCAG 2992 Query 2814 GAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTCATCACAGGATGTGGAG 2873 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 2993 GAAAGGAATCTTGAAGGTCATTTATTGTCATTGGATTCGATGTCATCACAGGATGTGGAG 3052 Query 2874 AAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATATAGGTGATGCAAATGATGAT 2933 ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| Sbjct 3053 AAGTCAAAAGAGAATCCACCATCTAGCAGCTCAGTGGAAAGAGGTGATGCAAATGATGAT 3112 Query 2934 GAGAAGTTTAAGATTGAGGAGAAAAGGATTATTCTCAAGTCATAGGAAGATCTGGATTCT 2993 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 3113 GAGAAGTTTAAGATTGAGGAGAAAAGGATTATTCTTAAGTCATAGGAACATCTGGATTCT 3172 Query 2994 AT 2995 || Sbjct 3173 AT 3174 > AT3G23910.1 | Symbols: | BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink). | chr3:8636427-8639442 REVERSE LENGTH=1531 Length=1531 Score = 172 bits (93), Expect = 1e-41 Identities = 132/151 (87%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 2798 AGATTCTAGTCGGCCGGAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTC 2857 |||||||||| || | ||||| ||||||||||||||||| ||||||||||||| ||||| Sbjct 425 AGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTC 484 Query 2858 ATCACAGGATGTGGAGAAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATA-TAG 2916 ||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | || Sbjct 485 ATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGA-AGTAT 543 Query 2917 GTGATGCAAATGATGATGAGAAGTTTAAGAT 2947 |||| | | ||||||||| ||||||||||| Sbjct 544 GTGAAGTGATTGATGATGACAAGTTTAAGAT 574 > AT3G24255.1 | Symbols: | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr3:8788854-8793368 FORWARD LENGTH=2777 Length=2777 Score = 172 bits (93), Expect = 1e-41 Identities = 132/151 (87%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 2798 AGATTCTAGTCGGCCGGAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTC 2857 |||||||||| || | ||||| ||||||||||||||||| ||||||||||||| ||||| Sbjct 1678 AGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTC 1737 Query 2858 ATCACAGGATGTGGAGAAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATA-TAG 2916 ||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | || Sbjct 1738 ATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGA-AGTAT 1796 Query 2917 GTGATGCAAATGATGATGAGAAGTTTAAGAT 2947 |||| | | ||||||||| ||||||||||| Sbjct 1797 GTGAAGTGATTGATGATGACAAGTTTAAGAT 1827 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 149045987653 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5