BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930465
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24170.1 | Symbols: ATGR1, GR1 | glutathione-disulfide reduc... 2479 0.0
> AT3G24170.1 | Symbols: ATGR1, GR1 | glutathione-disulfide reductase
| chr3:8729510-8734545 REVERSE LENGTH=2007
Length=2007
Score = 2479 bits (1342), Expect = 0.0
Identities = 1463/1523 (96%), Gaps = 1/1523 (0%)
Strand=Plus/Plus
Query 17 AATCATGGCGAGGAAGATGCTTGTTGATGGAGAGATTGATAAGGTGACGGCTGATGAAGC 76
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 252 AATCATGGCGAGGAAGATGCTTGTTGATGGTGAGATTGATAAGGTGGCGGCTGATGAAGC 311
Query 77 CAACGCCACGCACTATGATTTTGATTTGTTCGTCATCGGTGCCGGTAGTGGCGGTGTTCG 136
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 312 CAACGCGACGCACTATGATTTTGATTTGTTTGTCATCGGTGCCGGGAGTGGCGGTGTTCG 371
Query 137 TGCTGCTAGGTTTTCCGCTAATCACGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCA 196
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 372 TGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCA 431
Query 197 CCCTATTAGCTCCGAGGAGATTGGAGGAGTTGGTGGAACCTGTGTTATCCGTGGTTGTGT 256
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 432 CCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAACCTGTGTTATCCGTGGTTGTGT 491
Query 257 TCCTAAAAAGATTCTAGTCTATGGGGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAA 316
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 492 TCCTAAAAAGATTCTCGTCTATGGAGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAA 551
Query 317 TTATGGATGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAA 376
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TTATGGGTGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAA 611
Query 377 GACTGATGAGATTCTAAGACTGACTAATATCTACAAGCGGTTGTTGGCAAATGCTGCGGT 436
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 612 GACTGATGAGATACTAAGACTGAATAATATCTACAAGCGGTTATTGGCAAATGCTGCGGT 671
Query 437 GAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAATGAAGTGGAGGTGAGACAAAT 496
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 GAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAACGAAGTGGAGGTGAGACAAAT 731
Query 497 AGATGGCACGAAAATAAGCTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGC 556
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGC 791
Query 557 ACAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTAAGCTT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 792 GCAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTT 851
Query 617 GGAAGAATTTCCTAAGCGTGCTGTAGTGCTTGGAGGAGGGTACATTGCTGTGGAGTTTGC 676
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 852 GGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGGGTATATTGCTGTGGAGTTTGC 911
Query 677 ATCAATATGGCGTGGAATGGGTGCTACCGTAGATTTATTCTTCAGGAAGGAACTTCCACT 736
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 912 ATCAATATGGCGTGGAATGGGTGCTACTGTAGATTTATTCTTCAGGAAGGAACTTCCGCT 971
Query 737 AAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGT 1031
Query 797 TAACCTGCATCCGCAAACAAGTTTGACTCAGTTGATAAAAACAGACAACGGGATCAAAGT 856
||| |||||||| |||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 1032 TAATCTGCATCCACAAACAAGTTTGACTCAGTTGACAAAAACAGACCAGGGGATCAAAGT 1091
Query 857 CATATCGTCTCATGGGGAAGAATTCGTGGCAGATGTTGTCCTATTTGCTACTGGCAGAAA 916
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1092 CATATCGTCCCATGGGGAGGAATTCGTGGCAGATGTCGTCCTATTTGCTACTGGCAGAAG 1151
Query 917 TCCTAATACCAAGAGATTAAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGC 976
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCCTAATACCAAAAGATTGAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGC 1211
Query 977 TGTGAAGGTTGATGAGTACTCACGCACTAATATACCTAGCATATGGGCTGTGGGAGATGC 1036
|||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1212 TGTGAAGGTTGACGAGTATTCACGAACTAATATACCTAGCATATGGGCTGTAGGAGATGC 1271
Query 1037 TACAAACCGAATTAACCTTACACCTGTTGCATTAATGGAGGCCTCCTGCTTTGCGAACAC 1096
||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1272 CACAAACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGAACAC 1331
Query 1097 TGTTTTTGGTGGAAAGCCTACTAAAGCAGACTACAGCAATGTCGCATGTGCTGTATTTTG 1156
|| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1332 TGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG 1391
Query 1157 CATACCTCCACTAGCTGTGGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGG 1216
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGG 1451
Query 1217 GGATATTCTGGTTTTCACCTCAGGCTTTAATCCAATGAAAAACACCATTTCTGGACGGCA 1276
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1452 TGATATTCTGGTCTTCACCTCAGGCTTTAATCCAATGAAGAACACCATTTCTGGACGCCA 1511
Query 1277 GGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGACTGATAAGGTTATTGGAGCATC 1336
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1512 GGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGAGTGATAAGGTTATTGGAGCATC 1571
Query 1337 CATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCACTCAAGTGTGG 1396
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1572 CATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCGCTCAAGTGTGG 1631
Query 1397 AGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATT 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATT 1691
Query 1457 TGTGACAATGCGCAGTGTGACCAGACGCATTGCCTGCAAACCCAAACCTAAGACGAATCT 1516
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1692 TGTGACAATGCGCAGTGTGACCAGACGCATTGCCCACAAACCCAAACCTAAGACAAATCT 1751
Query 1517 ATGAACCGCAAAAATCTAAAGAG 1539
||||||||||||| | |||||||
Sbjct 1752 ATGAACCGCAAAA-TATAAAGAG 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76003625130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5