BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930498
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23990.1 | Symbols: HSP60, HSP60-3B | heat shock protein 60 ... 2985 0.0
AT2G33210.1 | Symbols: HSP60-2 | heat shock protein 60-2 | chr2... 1223 0.0
> AT3G23990.1 | Symbols: HSP60, HSP60-3B | heat shock protein 60
| chr3:8668918-8672578 FORWARD LENGTH=2129
Length=2129
Score = 2985 bits (1616), Expect = 0.0
Identities = 1721/1773 (97%), Gaps = 2/1773 (0%)
Strand=Plus/Plus
Query 4 TCTTCCTTCTCAGTCACCATGTATCGTTTCGCTTCTAACCTCGCCTCCAAGGCAAGGATT 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCTTCCTTCTCACTCACCATGTATCGTTTCGCTTCTAACCTCGCCTCCAAGGCAAGGATT 137
Query 64 GCTCAAAATACTCGCCAGGTTTCCAGCAGAATGAGCTGGAGCAGGAACTATGCAGCGAAA 123
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GCTCAAAACGCTCGCCAGGTTTCCAGCAGAATGAGCTGGAGCAGGAACTATGCAGCGAAA 197
Query 124 GAAATTAAGTTTGGTGTTGAAGCTCGAGCTTTGATGCTTAAGGGTGTTGAAGATCTTGCC 183
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAGATTAAGTTTGGTGTTGAAGCTCGAGCTTTGATGCTTAAGGGTGTTGAAGATCTTGCT 257
Query 184 GATGCTGTTAAAGTCACCATGGGTCCAAAGGGACGTAATGTTGTGATTGAGCAAAGTTGG 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 258 GATGCTGTTAAAGTCACCATGGGTCCCAAGGGACGTAATGTTGTGATTGAGCAAAGTTGG 317
Query 244 GGTGCTCCTAAAGTGACAAAAGATGGTGTTACTGTTGCTAAAAGCATTGAGTTCAAAGAC 303
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 318 GGTGCTCCTAAAGTGACAAAAGATGGTGTTACTGTTGCCAAAAGTATTGAGTTCAAAGAC 377
Query 304 AAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTT 437
Query 364 GCTGGTGATGGTACTACTTGTGCTACTGTACTCACCCGGGCTATATTTACCGAAGGATGC 423
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 438 GCTGGTGATGGTACTACTTGTGCTACTGTCCTCACCCGGGCTATATTTGCCGAAGGATGC 497
Query 424 AAATCAGTTGCCGCAGGAATGAATGCAATGGACTTGCGACGAGGTATTTCCATGGCAGTT 483
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 498 AAATCAGTTGCCGCAGGAATGAATGCAATGGACTTGCGAAGAGGTATTTCCATGGCAGTT 557
Query 484 GATGCTGTGGTGACAAACCTTAAAAGCAGGGCAAGGATGATCAGCACATCTGAAGAGATT 543
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 558 GATGCTGTGGTGACAAACCTTAAAAGCAAGGCTAGGATGATCAGCACATCTGAAGAGATT 617
Query 544 GCACAGGTTGGGACCATTTCTGCTAATGGAGAGAGGGAAATTGGTGAACTGATTGCAAAG 603
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 618 GCTCAGGTTGGAACCATTTCTGCTAATGGAGAGAGGGAAATTGGTGAACTTATTGCCAAG 677
Query 604 GCTATGGAGAAGGTTGGCAAAGAAGGTGTAATCACAATCCAAGATGGAAAGACATTGTTT 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 678 GCTATGGAGAAGGTTGGCAAAGAAGGTGTTATCACAATCCAAGATGGAAAGACATTGTTT 737
Query 664 AACGAGTTGGAAGTTGTAGAGGGGATGAAATTGGACAGAGGTTATACTTCCCCTTACTTT 723
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 738 AACGAGTTGGAAGTTGTAGAGGGGATGAAATTGGACAGAGGTTATACTTCACCATACTTT 797
Query 724 ATCACGAATCAAAAAACCCAAAAATGTGAACTAGATGATCCTCTCATTCTTATCCATGAA 783
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 798 ATCACTAATCAAAAAACCCAAAAATGTGAACTAGACGATCCTCTCATTCTTATCCACGAG 857
Query 784 AAGAAGATCTCAAGCATCAACTCTATAGTGAAAGTGTTGGAGTTGGCTCTGAAGAGGCAA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AAGAAGATCTCAAGCATCAACTCTATAGTGAAAGTGTTGGAGTTGGCTCTGAAGAGGCAA 917
Query 844 AGGCCACTGTTGATTGTGTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTT 903
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTT 977
Query 904 AACAAGCTCCGCGCCGGAATCAAGGTCTGTGCCATCAAGGCCCCTGGATTTGGAGAGAAT 963
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 978 AACAAGCTCCGTGCCGGAATTAAGGTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAAT 1037
Query 964 AGGAAGGCCAATTTGCAAGACCTTGCTGCCCTTACTGGTGGAGAGGTTATCACAGATGAG 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1038 AGGAAGGCCAATTTGCAAGACCTTGCTGCCCTTACTGGTGGAGAGGTTATCACAGACGAG 1097
Query 1024 CTTGGCATGAATCTGGAGAAGGTGGACCTGGGCATGCTAGGAACCTGCAAAAAGGTTACA 1083
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1098 CTTGGCATGAATCTGGAGAAGGTGGACCTAAGCATGCTAGGAACCTGCAAAAAGGTTACA 1157
Query 1084 GTCTCCAAGGACGACACTGTTATTCTTGATGGGGCTGGCGACAAGAAAGGCATTGAGGAA 1143
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1158 GTCTCCAAGGACGACACTGTTATTCTTGATGGGGCTGGCGACAAGAAAGGAATTGAGGAA 1217
Query 1144 AGATGTGAACAGATTAGGTCAGCAATTGAACTGAGCACCTCAGATTATGACAAGGAAAAA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGATGTGAACAGATTAGGTCAGCAATTGAACTGAGCACCTCAGATTATGACAAGGAAAAA 1277
Query 1204 CTGCAAGAAAGGTTGGCTAAGCTCTCTGGAGGTGTTGCAGTTTTGAAGATTGGAGGAGCA 1263
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1278 CTGCAAGAAAGGTTGGCTAAGCTCTCTGGAGGTGTTGCAGTGTTGAAGATTGGAGGAGCA 1337
Query 1264 AGTGAAGCTGAAGTTGGTGAGAAGAAAGACAGAGTGACAGATGCTTTGAATGCCACTAAA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 AGTGAAGCTGAAGTTGGTGAGAAGAAAGACAGAGTGACAGATGCTTTGAATGCCACTAAA 1397
Query 1324 GCAGCTGTTGAAGAGGGTATTTTGCCAGGAGGAGGTGTGGCTCTTCTATACGCAGCGAGA 1383
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1398 GCAGCAGTTGAAGAGGGTATTTTACCAGGAGGAGGTGTGGCTCTTCTATACGCAGCAAGA 1457
Query 1384 GAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAG 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 GAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAG 1517
Query 1444 AACGCATTGAAGACTCCTGTTTACACAATCGCTTCAAATGCTGGAGTTGAAGGTGCTGTT 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 AACGCATTGAAGACTCCTGTTTACACAATCGCTTCAAATGCTGGAGTTGAAGGTGCTGTT 1577
Query 1504 ATAGTTGGCAAGCTCTTGGAACAAGATAACCCGGACCTCGGTTATGATGCTGCTAAAGGT 1563
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1578 ATTGTTGGCAAGCTCTTGGAGCAAGATAACCCAGACCTCGGTTATGATGCTGCTAAAGGT 1637
Query 1564 GAATATGTGGATATGGTGAA-GTCCGGTATCATAGACCCTCTGAAAGTAATCAGGACAGC 1622
|||||||||||||||||||| | | || |||||||||||||||||||| |||||||||||
Sbjct 1638 GAATATGTGGATATGGTGAAAG-CTGGAATCATAGACCCTCTGAAAGTGATCAGGACAGC 1696
Query 1623 TCTGGTTGATGCTGCGAGTGTGTCATCTTTGTTGACGACAACTGAAGCTGTAGTGGTTGA 1682
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1697 TTTGGTTGATGCTGCGAGTGTGTCATCTTTGTTGACGACAACGGAAGCTGTAGTGGTTGA 1756
Query 1683 GCTTCCGAAAGACGAAAACGAGTCAGGAGGAGCCGGAGCAGGCATGGGTGGAATGGGAGG 1742
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1757 TCTTCCGAAAGACGAAAGCGAGTCAGGAGCAGCAGGAGCAGGCATGGGTGGAATGGGAGG 1816
Query 1743 CATGGACTACTAGATCCACTAAATTCTGTCTTT 1775
|||||||||||||||||||||||||||||||||
Sbjct 1817 CATGGACTACTAGATCCACTAAATTCTGTCTTT 1849
> AT2G33210.1 | Symbols: HSP60-2 | heat shock protein 60-2 | chr2:14074907-14078731
REVERSE LENGTH=2107
Length=2107
Score = 1223 bits (662), Expect = 0.0
Identities = 1298/1605 (81%), Gaps = 44/1605 (3%)
Strand=Plus/Plus
Query 106 AGGAACTATGCAGCGAAAGAAATTAA-GTTTGGTGTTGAAGCTCGAGCTTTGATGCTTAA 164
||||| |||||||| ||||| | ||| ||| |||||||||||||| ||||| |||||||
Sbjct 251 AGGAATTATGCAGCAAAAGACA-TAAGGTTCGGTGTTGAAGCTCGGGCTTTAATGCTTAG 309
Query 165 GGGTGTTGAAGATCTTGCCGATGCTGTTAAAGTCACCATGGGTCCAAAGGGACGTAATGT 224
||||||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||||||
Sbjct 310 GGGTGTTGAGGATCTTGCTGATGCAGTTAAAGTCACTATGGGACCCAAGGGTCGTAATGT 369
Query 225 TGTGATTGAGCAAAGTTGGGGTGCTCCTAAA-GTGACAAAAGATGGTGTTACTGTTGCTA 283
| || || ||||| |||||||| || ||| |||||||| |||||||| |||||||| |
Sbjct 370 CATCATCGAACAAAGCTGGGGTGCACC-AAAGGTGACAAAGGATGGTGTGACTGTTGCCA 428
Query 284 AAAGCATTGAGTTCAAAGACAAAATTAAGAACGTTGGTGCTAGTCTTGTGAAGCAGGTTG 343
| |||||||||||||| || | |||||||||||||||||| ||||||||||| |||||||
Sbjct 429 AGAGCATTGAGTTCAAGGATAGAATTAAGAACGTTGGTGCCAGTCTTGTGAAACAGGTTG 488
Query 344 CAAATGCTACTAATGATGTTGCTGGTGATGGTACTACTTGTGCTACTGTACTCACCCGGG 403
| || || || ||||| || ||||||||||| || || ||||| || || || || | |
Sbjct 489 CTAACGCCACAAATGACGTAGCTGGTGATGGAACAACGTGTGCCACAGTCCTTACTAGAG 548
Query 404 CTATATTTACCGAAGGATGCAAATCAGTTGCCGCAGGAATGAATGCAATGGACTTGCGAC 463
|||| || || ||||| || |||||||||||||| |||||||||||||||||| | |||
Sbjct 549 CTATCTTCACGGAAGGTTGTAAATCAGTTGCCGCTGGAATGAATGCAATGGACCTAAGAC 608
Query 464 GAGGTATTTC-CA-TGGCAGTTGATGCTGTGGTGACAAACCTT-AAAAGCAGGGCAAGGA 520
| |||| || | ||||||||||| |||| ||||| || ||| | ||| | ||| | |
Sbjct 609 GTGGTA--TCAAATTGGCAGTTGATACTGTTGTGACGAA-CTTGCAGAGCCGAGCACGCA 665
Query 521 TGATCAGCACATCTGAAGAGATTGCACAGGTTGGGACCATTTCTGCTAATGGAGAGAGGG 580
|||| ||||| |||||||| || || || ||||| || || || ||||||||||| ||||
Sbjct 666 TGATTAGCACCTCTGAAGAAATCGCCCAAGTTGGAACAATATCAGCTAATGGAGATAGGG 725
Query 581 AAATTGGTGAACTGATTGCAAAGGCTATGGAGAAG-GTTGGCAAAGAAGGTGTAATCACA 639
||||||||||||||||||||||||||||||| || || |||||||| || || ||||||
Sbjct 726 AAATTGGTGAACTGATTGCAAAGGCTATGGA-AACTGTCGGCAAAGAGGGAGTGATCACA 784
Query 640 ATCCAAGATGGAAAGACATTGTTTAACGAGTTGGAAGTTGTAGAGGGGATGAA-ATTGGA 698
|| |||||||| ||||| |||||||| ||| |||||||||| ||||| ||||| |||| |
Sbjct 785 ATTCAAGATGGCAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTG-A 843
Query 699 CAGAGGTTATA-CTTCCCCTTACTTTATCACGAATCAAAAAACCCAAAAATGTGAACTAG 757
||| || || | || |||| ||||| || || || | ||||| ||||||||||||||||
Sbjct 844 CAGGGGATACATCT-CCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTGAACTAG 902
Query 758 ATGATCCTCTCATTCTTATCCATGAAAAGAAGATCTC-AAGCATCAACTCTATAGTGAAA 816
| |||||||||||||||||||| || ||||| || || || || ||| | || ||||||
Sbjct 903 AAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAAT-ATAAACGCAATGGTGAAA 961
Query 817 GTGTTGGAGTTGGCTCTGAAGAGGCAAAGGCCACTGTTGATTGT-GTCTGAAGATGTGGA 875
|| || || |||| || |||| ||||||||| ||| |||| || | |||| ||||||||
Sbjct 962 GTATTAGAACTGGCCCTCAAGAAGCAAAGGCCGCTGCTGATCGTTG-CTGAGGATGTGGA 1020
Query 876 AAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGCGCCGGA-ATCAAGGTCTGTG 934
|| ||||||||||| || || || || ||||| || || || | |||||||||||||
Sbjct 1021 GAGCGATGCTCTTGCCACCCTAATTCTGAACAAACTTCGTGCTA-ATATCAAGGTCTGTG 1079
Query 935 CCATCAAGGCCCCTGGATTTGGAGAGAATAGGAAGGCCAATTTGCAAGACCTTGCTGCCC 994
| | ||||||||||| ||||||||||| | ||||||||||| || || || |||||||
Sbjct 1080 CTGTGAAGGCCCCTGGTTTTGGAGAGAACCGAAAGGCCAATTTACATGATCTAGCTGCCC 1139
Query 995 TTACTGGTGGAGAGGTTATCACAGATGAGCTTGGC-ATGAATCTGGAGAAGGTGGACCTG 1053
| ||||| | |||| || ||||| ||| |||| |||||||| || || | |||||
Sbjct 1140 TCACTGGAGCCCAGGTAATAACAGAAGAG-TTGGGTATGAATCTAGACAACATTGACCTC 1198
Query 1054 GGCATGCTAGGAACCTGCAAAAAGGTTACAGTCTCCAAGGACGACACTGTTATTCTTGAT 1113
| ||| | |||| |||||| ||||| || || ||||| || || |||||| |||| |||
Sbjct 1199 AGTATGTTTGGAAACTGCAAGAAGGTAACGGTATCCAAAGATGATACTGTTGTTCTCGAT 1258
Query 1114 GGGGCTGGCGACAAGAAAGGCA-TTGAGGAAAGATGTGAACAGATTAGG-TC-A-GCAAT 1169
|||||||| |||||| ||| || ||| |||| ||||||||||||| | | || | | |
Sbjct 1259 GGGGCTGGTGACAAGCAAG-CAATTGGGGAACGATGTGAACAGAT-ACGATCCATGG--T 1314
Query 1170 TGAA-CTGAGCACCTCAGATTATGACAAGGAAAAACTGCAAGAAAGGTTGGCTAAGCTCT 1228
|||| | ||||| || |||||||||||||| || |||||||||||||||||||||| |
Sbjct 1315 TGAAGCA-AGCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGGTTGGCTAAGCTTT 1373
Query 1229 CTGGAGGTGTTGCAGTTTTGAAGATTGGAGGAGCAAGTGA-AGCTGAAGTTGGTGAGAAG 1287
| || |||||||| || | |||||||||||||||||||| | | |||||| |||| |||
Sbjct 1374 CGGGTGGTGTTGCTGTACTAAAGATTGGAGGAGCAAGTGAGA-CAGAAGTTAGTGAAAAG 1432
Query 1288 AAAGACAGAGTGACAGATGCTTTGAATGCCACTAAAGCAGCTGTTGAAGAGGGTATT-TT 1346
||||| ||||| || |||||| | ||||||||||||||||| || || ||||||||| ||
Sbjct 1433 AAAGATAGAGTAACGGATGCTCTAAATGCCACTAAAGCAGCCGTAGAGGAGGGTATTGTT 1492
Query 1347 GCCAGGAGGAGGTGTGGCTCTTCTATACGCAGCGAGAGAG-TTGGAAAAACTT-CCAACA 1404
||||| || ||||| |||||| | || || ||| ||| ||| | || ||| ||| ||
Sbjct 1493 -CCAGGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTG-AGAAGCTTTCCA-CA 1549
Query 1405 GCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAGAACGCATTGAAGACTCCTGTT 1464
|| |||||||| ||||| |||||||| || || ||||| |||||| | ||||| ||||||
Sbjct 1550 GCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACTCAAGACACCTGTT 1609
Query 1465 TACACAATCGCTTCAAATGCTGGAGTTGAAGGTGCTGTTATAGTTGGCAAGCTCTTGGAA 1524
||||| || ||||| ||||||||||| || ||||| ||| | || |||||||| ||||||
Sbjct 1610 TACACGATTGCTTCCAATGCTGGAGTCGAGGGTGCAGTTGTCGTAGGCAAGCTTTTGGAA 1669
Query 1525 CAAGATAACCCGGACCTCGGTTATGATGCTGCTAAAGGTGAATATGTGGATATGGTGAAG 1584
|||||||| || ||||| |||||||||||||||||||| ||||||||||| ||| | |||
Sbjct 1670 CAAGATAATCCTGACCTTGGTTATGATGCTGCTAAAGGAGAATATGTGGACATGATAAAG 1729
Query 1585 TCCGGTATCATAGACCCTCTGAAAGTAATCAGGACAGC-TCTGGTTGATGCTGCGAGTGT 1643
| ||||| || || ||| ||||||| ||||| || || | | ||||||||||| |||||
Sbjct 1730 GCTGGTATTATCGATCCTTTGAAAGTGATCAGAACCGCAT-TAGTTGATGCTGCAAGTGT 1788
Query 1644 GTCATCTTTGTTGACGACAACTGAAGCTGTAGTGGTTGAGCTTCC 1688
|| ||||||||||| || || ||||| || ||| |||| ||||
Sbjct 1789 TTCGTCTTTGTTGACAACGACGGAAGCAGTTGTGACTGAGATTCC 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87800753205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5