BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930502
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23980.1 | Symbols: BLI, KOS1 | BLISTER | chr3:8662433-86677... 3238 0.0
AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8... 104 4e-21
> AT3G23980.1 | Symbols: BLI, KOS1 | BLISTER | chr3:8662433-8667752
REVERSE LENGTH=2842
Length=2842
Score = 3238 bits (1753), Expect = 0.0
Identities = 2071/2217 (93%), Gaps = 52/2217 (2%)
Strand=Plus/Plus
Query 17 TTTCAATGGCATCAGCCACTAGTTCCCGGAGGCAAGAGGACGCTGAAGCTGGACGCCGTA 76
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 308 TTTCAATGGCATCAGCTACTAGTTCCCGGAGGCAAGAGGACGTTGAAGCTGGACGCCGTA 367
Query 77 AGCTTGAGCAGTTTCGTAAACAAAAAGCAGCAGAACGAGCTAAGAAGGCATCACAGAGTA 136
||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |
Sbjct 368 AGCTTGAGCAGTTTCGTAAACGAAAAGCAGCAGAAAAAGCTAAAAAGGCATCACAGA--A 425
Query 137 GTACCACACAACCTGTTGTTGATAATAGCCAACAAAGTGTCACAGATTCAGATGGAGTTG 196
| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 426 -T---ACACAACC---TGTTGATAATAGCCAACAAAGTGTCATAGATTCAGATGGAGCTG 478
Query 197 TTGCATCTATGTCTAATGGACCTCTCAATCAATCTGCTGAAACTTCCTCTAATGAAACCC 256
||||||||| ||||||||||||||||| |||||||||||| || |||| ||||||||||
Sbjct 479 GTGCATCTATCTCTAATGGACCTCTCAAGCAATCTGCTGAATCTACCTCAAATGAAACCC 538
Query 257 ATACCAAATCCTCGTTTTCTGGAGATGTATATAATTTATCGTTTTCGAATATAGCACCGG 316
||||| || |||||||||||||||||| |||||||||| |||| ||
Sbjct 539 ATACC-AA--------------AGATGTATATAATTTATCATTTTCGAATACAGCAATGG 583
Query 317 ATGATGGGAGCAAAGAAAGAAGTAAACAAGATTATGGGCAGGAATCAGTTGGCAAAGTTG 376
||||||| |||||||||||||||| ||||||| |||| ||||||||||| ||||||||||
Sbjct 584 ATGATGGAAGCAAAGAAAGAAGTAGACAAGATGATGGTCAGGAATCAGTGGGCAAAGTTG 643
Query 377 ATTTTTCTAATAGCTTAGAGGTCATAGGTTCCTTGAAGGACTTAACAGGGAATACTAGGC 436
|||||||||||||||||||| | |||||||| | |||||||||||||| |||||||||||
Sbjct 644 ATTTTTCTAATAGCTTAGAGTTGATAGGTTCATCGAAGGACTTAACAGTGAATACTAGGC 703
Query 437 GTGAAGATGTACCTTATAGCAATATAGACAAGCAATCGAGTGAAAGTTTTGGTCTTGCTT 496
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 704 CTGAAGTTGTACCTTATAGCAATATAGACAAGCAATCGAGTGAAAGTTTTGATCGTGCTT 763
Query 497 CTACTCTAAGAGAAAGTGATGGTGTTCCCAAAGACACATCTCCTTTTTCTGGAACCTCAA 556
|||||||||||| || | | | |||||| |||||||||||||||||
Sbjct 764 CTACTCTAAGAG-AA---A---------C--TG---CATCTCTTTTTTCTGGAACCTCAA 805
Query 557 TGCAAATGGACGGCTTCATTCACGGCAGTGGATTAATCTCATCTAGAAAAGACTCTCTAC 616
|||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 806 TGCAAATGGATGGTTTCATTCACGGCAGTGGATTAACCTCATCCAGAAAAGACTCTCTAC 865
Query 617 AACCTACTACCAGGATGGCAGGGACTTTTCACGAAGTTGCCGAAAACCAACAGGGAAGTG 676
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 866 AACCTACTACCAGGATGGCAGGGTCTTTTGACGAAGTTGCCAAAAACCAACAGGGAAGTG 925
Query 677 GTGAACTAGGAGGGGGTAGCATTGTGCAGAAGCCAACTTTGTCTAGCAGTTATTTGTTTA 736
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 926 GTGAACTAGGA---GGTAGCATTGTGCAGAAGCCAACTTTGTCAAGCAGTTATTTGTTTA 982
Query 737 GTTCTCCTGACACATCATCTCGACCTTCTGAATCTTCAGATTTCAGTGTAAATTTCACAA 796
|||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 983 ATTCTCCAGACACATCATCTCGACCTTCTGAACCTTCAGATTTCAGTGTGAATATCACAA 1042
Query 797 GCTCTTCACCGTTAAACTCAGCTAAAAGTGAAGCAATTGTGAAGAGATCTCGTCCGTCTT 856
|||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1043 GCTCTTCACCATTAAACTCAGCTAAGAGTGAAGCAACTGTGAAGAGATCTCGTCCGTCTT 1102
Query 857 TCCTTGATTCCCTTAATATTTCAAGAGCTCCAGAGACTCAATATCAACACCCTGAGATAA 916
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TCCTTGATTCCCTCAATATATCAAGAGCTCCAGAGACTCAATATCAACACCCTGAGATAC 1162
Query 917 AAGCGGATTTGGTTACATCCAGTGGTTCCCAACTAACTGGCAGTGATGGTTTTGGGCCAT 976
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1163 AAGCGGATTTGGTTACATCCAGTGGTTCCCAACTATCTGGCAGTGATGGTTTTGGGCCAT 1222
Query 977 CTTATATATCAGGGAGAAGAGACAGTAATGGA-C--CATCTTTGACAAGCGGAGCATCTG 1033
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1223 CTTATATATCAGGGAGAAGAGACAGTAATGGACCATCATCTTTGACAAGCGGAGCATCTG 1282
Query 1034 ATTCTCCTAATCCATTTGAAAAATTCCGGAGTCCTTTGTATCCTGCTGCCAATGGAGTAA 1093
||| |||||||||||||||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 1283 ATTATCCTAATCCATTTGAAAAGTTTCGGAGTTCTTTATATCCTGCTGCCAATGGAGTAA 1342
Query 1094 TGCCAGGTTTTACTGACTTCTCCATGCCAAAACAAAATGATGATTTCACTGCTCTGGAAC 1153
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1343 TGCCAGGTTTTACTGATTTCTCTATGCCAAAACAAAATGATGATTTTACTGCTCTGGAAC 1402
Query 1154 AGCATATTGAGGATTTAACACAAGAAAAGTTTTCATTGCAAAGGGATCTTGATGCTTCAC 1213
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1403 AGCATATTGAGGATTTAACACAAGAAAAGTTTTCACTGCAAAGGGATCTTGATGCTTCAC 1462
Query 1214 GTGCACTGGCAGAATCCTTAGCATCAGAAAATTCTTCGATGACAGACACTTATAACCAGC 1273
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1463 GTGCACTGGCAGAATCCTTAGCATCAGAGAATTCTTCAATGACAGACACTTATAACCAGC 1522
Query 1274 AGAGAGGTCTTGTCAACCAACTAAAAGATGACATGGAGAGGCTATATCAACAGATCCAAG 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 AGAGAGGTCTTGTCAACCAACTAAAAGATGACATGGAGAGGCTATATCAACAGATCCAAG 1582
Query 1334 TCCAAATGGGCGAACTTGAGTCTGTCAGGATTGAGTATGCAAACGCGCAGCTAGAATGTA 1393
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1583 CCCAAATGGGCGAACTTGAGTCTGTCAGGGTTGAGTATGCAAACGCGCAGCTAGAATGTA 1642
Query 1394 ATGCTGCTGATGAGCGTTCCCAAATACTGGCTTCTGAAGTCATCAGTTTGGAAGATAAGG 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 ATGCTGCTGATGAGCGTTCCCAAATACTGGCTTCTGAAGTCATCAGTTTGGAAGATAAGG 1702
Query 1454 CTCTCAGACTCAGATCTAATGAGTTAAAGCTGGAGAGGGAACTGGAGAATGCACAAGCAG 1513
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1703 CTCTCAGACTCAGATCTAATGAGTTAAAGCTGGAGAGGGAACTGGAGAAGGCACAAACAG 1762
Query 1514 AAATGTTATCTTACAAGAAAAAATTACAGAGCCTAGAGAAAGATCGTCAAGATTTACAAT 1573
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1763 AAATGTTATCTTACAAGAAAAAATTGCAGAGCTTAGAGAAAGATCGTCAAGATTTACAAT 1822
Query 1574 CTACTATTAAAGCTCTTCAGGAAGAGAAGAAGGTCCTACAGACTATGGTGCAGAAAGCTT 1633
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1823 CTACTATTAAAGCTCTTCAGGAAGAGAAGAAGGTCCTACAAACTATGGTGCAGAAAGCTT 1882
Query 1634 CCTCTGGTGGAAAATCCACTGATCTGAGTAAAACCTCAACTAGCAGAAAAAACGCATCAA 1693
| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 1883 CATCTGGTGGAAAATCCACTGATCTGAGTAAAAACTCAACTAGCAGAAAGAACGTGTCAA 1942
Query 1694 CCTCTACAGAAGGTCTCGCAATCTCAGATACTACTCCAAAGAGCTCCAACCAGGAAACAG 1753
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1943 CCTCTACAGAAGGTCTTGCAATCTCAGATACTACGCCAGAGAGCTCCAACCAGGAAACAG 2002
Query 1754 ATTCTGCTACTCTGCTCGAAAGTGATTCATCTAATACAGCTATCATTCCTGAAACTGGAC 1813
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2003 ATTCTACTACTCTGCTCGAAAGTGATTCATCTAATACAGCTATCATTCCTGAAACTAGAC 2062
Query 1814 AATTAACTCTTGAAGGTTTTTCATTGAGTGTCCCAGCTGATCAGATGAGAGTGATTCATA 1873
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2063 AATTAACTCTTGAAGGCTTTTCATTGAGCGTCCCAGCTGATCAGATGAGAGTGATTCATA 2122
Query 1874 ACATTAATACGCTGATTGCTGAGTTGGCAATTGAGAAGGAAGAACTGGTGCAAGCACTGT 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 ACATTAATACGCTGATTGCTGAGTTGGCAATTGAGAAGGAAGAACTGGTGCAAGCACTGT 2182
Query 1934 CATCTGAGTTATCTCGAAGTGCGCAGGTGCAGGAGCTGAACAAAGAATTATCCAGAAAAC 1993
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2183 CATCTGAGTTATCTCGAAGTGCGCATGTGCAGGAGCTGAACAAAGAGTTATCCAGAAAAC 2242
Query 1994 TTGAAGCACAGACAAAAAGGTTAGAGCTTGTAACAGCACAGAAGATGGCCATAGACAATG 2053
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2243 TTGAAGCGCAGACGCAAAGGTTAGAGCTTGTAACAGCGCAGAAGATGGCCATAGACAATG 2302
Query 2054 TTTCACCTGAAAAGCAGCAGCTGGATTCTCATGTTGTTCAAGAGAGAACACCGATTGCAG 2113
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2303 TTTCACCAGAAAAGCAGCAGCCGGACACTCATGTTGTTCAAGAGAGAACACCGATTGCAG 2362
Query 2114 ATGAAGGCGATGAGGTGGTAGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAG 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2363 ATGAAGGCGATGAGGTGGTAGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAG 2422
Query 2174 GACCGTCGAAAAGAAGGACAAGCAAGCTTCTCTAATGCATGG----CTTGCTCAGTC 2226
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2423 GACCGTCGAAAAGAAGGACAAGCAAGCTTCTCTAATGCATGGATGGCTTGCTCAGTC 2479
> AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8657439
REVERSE LENGTH=1618
Length=1618
Score = 104 bits (56), Expect = 4e-21
Identities = 77/86 (90%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 2133 AGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAG-GACCGTCGAAAAGAAGGA 2191
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
Sbjct 26 AGAAAGGGTTCTAGGATGGATCATGAAGATGTTACCAGGAGAG-CCGTCGAAAAGAAGAA 84
Query 2192 CAAGCAAGCTTC-TC-T-AATGCATG 2214
||||| |||||| || | ||| ||||
Sbjct 85 CAAGCTAGCTTCGTCGTTAATACATG 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110541600090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5