BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930537

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-1...   414    2e-115


> AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-18430319 
REVERSE LENGTH=1414
Length=1414

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 287/317 (91%), Gaps = 5/317 (2%)
 Strand=Plus/Plus

Query  8    GTCGGGTCGGGTGTATGACCCGGTGGTTGTTTGATTCTTCGATTGAAATTAAGGTTAACG  67
            |||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct  620  GTCGGGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACG  679

Query  68   GCGCCGCGTTGATTGAGATGGTGTTGACCGGATCGAAATTGATGGATCTAAAACTGATAA  127
             ||||||||||||||||||||||||||||||| ||||||  |||||||| ||| |||| |
Sbjct  680  CCGCCGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAATTGATCA  739

Query  128  TTTCTGGATCCGATTCAATTTTTGAAGGCGTTCTCGATCTTCTCAAGATTCTTATTTCAT  187
            |||| ||||| ||||| || || ||||||||||||||||||||||||| ||  |||||||
Sbjct  740  TTTCCGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCAT  799

Query  188  CGCGGCGAGCTTTGCAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAA  247
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  800  CGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAA  859

Query  248  AGAAACATCTAGCGATCTCCACCGGAGCTCCGGGAATTTTAATCGACCAT---G-G-CGG  302
             || |||||||||||||||| ||||||||||||| ||||||||||||| |   | | |||
Sbjct  860  CGAGACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGG  919

Query  303  ATTTCGATAGGTGTGAT  319
            |||||||||||||||||
Sbjct  920  ATTTCGATAGGTGTGAT  936



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15482466692


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5