BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930537 Length=332 Score E Sequences producing significant alignments: (Bits) Value AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-1... 414 2e-115 > AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-18430319 REVERSE LENGTH=1414 Length=1414 Score = 414 bits (224), Expect = 2e-115 Identities = 287/317 (91%), Gaps = 5/317 (2%) Strand=Plus/Plus Query 8 GTCGGGTCGGGTGTATGACCCGGTGGTTGTTTGATTCTTCGATTGAAATTAAGGTTAACG 67 |||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 620 GTCGGGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACG 679 Query 68 GCGCCGCGTTGATTGAGATGGTGTTGACCGGATCGAAATTGATGGATCTAAAACTGATAA 127 ||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||| | Sbjct 680 CCGCCGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAATTGATCA 739 Query 128 TTTCTGGATCCGATTCAATTTTTGAAGGCGTTCTCGATCTTCTCAAGATTCTTATTTCAT 187 |||| ||||| ||||| || || ||||||||||||||||||||||||| || ||||||| Sbjct 740 TTTCCGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCAT 799 Query 188 CGCGGCGAGCTTTGCAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAA 247 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 800 CGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAA 859 Query 248 AGAAACATCTAGCGATCTCCACCGGAGCTCCGGGAATTTTAATCGACCAT---G-G-CGG 302 || |||||||||||||||| ||||||||||||| ||||||||||||| | | | ||| Sbjct 860 CGAGACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGG 919 Query 303 ATTTCGATAGGTGTGAT 319 ||||||||||||||||| Sbjct 920 ATTTCGATAGGTGTGAT 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15482466692 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5