BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930834 Length=859 Score E Sequences producing significant alignments: (Bits) Value AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light ha... 1382 0.0 AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light ha... 1325 0.0 AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II... 839 0.0 > AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823240-1824425 REVERSE LENGTH=1101 Length=1101 Score = 1382 bits (748), Expect = 0.0 Identities = 823/860 (96%), Gaps = 2/860 (0%) Strand=Plus/Plus Query 1 TCCTTTCATTGTAGTTTAA-GAAAAGATTACGATAATGGCTACATCAGCTATCCAGCAAT 59 |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 61 TCCTTTCATTGTAG-TTAACGAAAAGATTACGATAATGGCAACATCAGCTATCCAGCAAT 119 Query 60 CCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTCCAACGACCTCCTCCGCAAGGTTGGTG 119 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 120 CCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCCAACGAACTCCTCCGCAAGGTTGGTG 179 Query 120 TTTCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATCT 179 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TATCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATCT 239 Query 180 GGTATGGACCAGACCGTCCCAAATACTTGGGACCATTCTCGGAGAACACACCATCGTACT 239 |||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 240 GGTACGGACCAGACCGTCCCAAGTACTTAGGACCATTCTCGGAGAATACACCGTCCTACC 299 Query 240 TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCAGCTGACCCGG 299 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 300 TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCGGCTGACCCGG 359 Query 300 AGACATTCGCTAAGAACCGTGAGCTTGAGGTAATCCACAGCAGATGGGCTATGTTGGGTG 359 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 360 AGACATTCGCTAAGAACCGTGAGCTTGAAGTAATCCACAGCAGATGGGCTATGTTGGGTG 419 Query 360 CTCTTGGCTGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCCG 419 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTCTCGGATGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCCG 479 Query 420 TGTGGTTCAAGGCGGGTTCTCAGATCTTCTCAGAAGGAGGTCTTGATTACCTCGGAAACC 479 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 480 TGTGGTTCAAGGCAGGTTCTCAGATTTTCTCAGAAGGAGGTCTTGATTACCTCGGAAACC 539 Query 480 CTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTACTCAAGTTGTGCTCATGG 539 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 CTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTGTTCAAGTTGTGCTCATGG 599 Query 540 GCTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGGCTTGACCCACTTT 599 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 600 GGTTCATTGAAGGCTACAGAATCGGAGGTGGACCTCTCGGAGAAGGGCTTGACCCGCTTT 659 Query 600 ACCCCGGAGGTGCGTTCGACCCTTTGAACTTGGCAGAGGATCCAGAGGCCTTCTCTGAGC 659 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 660 ACCCCGGAGGTGCGTTCGACCCATTGAACTTGGCTGAGGATCCAGAGGCTTTCTCTGAGC 719 Query 660 TGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTTG 719 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGAAGGTGAAGGAGCTTAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTTG 779 Query 720 TCCAAGCCATTGTCACTGGTAAAGGTCCCATTGAGAACTTGTTTGATCACTTGGCTGATC 779 ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 780 TCCAAGCCATTGTTACTGGTAAAGGTCCCATTGAGAACTTATTTGATCATTTGGCTGATC 839 Query 780 CTGTGGCTAACAACGCCTGGGCTTATGCTACTAACTTTGTCCCCGGAAAGTAATTGTCAT 839 |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || | Sbjct 840 CTGTGGCTAACAACGCCTGGTCTTACGCTACTAACTTTGTCCCCGGAAATTAATTATCTT 899 Query 840 ATGTATTTCCTTCATAATCT 859 |||||||| ||||||||||| Sbjct 900 ATGTATTTGCTTCATAATCT 919 > AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light harvesting complex gene 2.2 | chr2:1799234-1800392 REVERSE LENGTH=1063 Length=1063 Score = 1325 bits (717), Expect = 0.0 Identities = 814/861 (95%), Gaps = 5/861 (1%) Strand=Plus/Plus Query 1 TCCTTTCATTGTAGTTTAAGA-AAAGATTACGATAATGGCTACATCAGCTATCCAGCAAT 59 |||||||||||||| |||| | |||||||||||| ||||| |||||||||||||| |||| Sbjct 31 TCCTTTCATTGTAG-TTAA-ACAAAGATTACGATTATGGCCACATCAGCTATCCAACAAT 88 Query 60 CCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTCCAACGACCTCCTCCGCAAGGTTGGTG 119 |||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||| || | Sbjct 89 CCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCCAGCGACCTCATCCAAAAGGTGGGCG 148 Query 120 T-TTCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATC 178 | || || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 149 TCTT-GGGCGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCCCAAAGCATC 207 Query 179 TGGTATGGACCAGACCGTCCCAAATACTTGGGACCATTCTCGGAGAACACACCATCGTAC 238 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 208 TGGTATGGACCAGACCGTCCCAAGTACTTGGGACCATTCTCGGAGAACACACCGTCTTAC 267 Query 239 TTAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCAGCTGACCCG 298 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 268 TTAACTGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCGGCTGACCCG 327 Query 299 GAGACATTCGCTAAGAACCGTGAGCTTGAGGTAATCCACAGCAGATGGGCTATGTTGGGT 358 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 328 GAGACATTCGCTAAGAACCGTGAGCTTGAAGTAATCCACAGCAGATGGGCTATGTTGGGT 387 Query 359 GCTCTTGGCTGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCC 418 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 388 GCTCTCGGATGCACATTCCCTGAAATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCC 447 Query 419 GTGTGGTTCAAGGCGGGTTCTCAGATCTTCTCAGAAGGAGGTCTTGATTACCTCGGAAAC 478 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct 448 GTGTGGTTCAAGGCAGGCTCTCAGATTTTCTCAGAAGGAGGTCTTGATTACCTCGGAAAC 507 Query 479 CCTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTACTCAAGTTGTGCTCATG 538 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 508 CCTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTGTTCAAGTTGTGCTCATG 567 Query 539 GGCTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGGCTTGACCCACTT 598 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 568 GGGTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGACTTGACCCGCTT 627 Query 599 TACCCCGGAGGTGCGTTCGACCCTTTGAACTTGGCAGAGGATCCAGAGGCCTTCTCTGAG 658 || |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 628 TATCCCGGAGGTGCGTTCGACCCATTGAACTTGGCTGAGGATCCAGAGGCTTTCTCTGAG 687 Query 659 CTGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688 CTGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTT 747 Query 719 GTCCAAGCCATTGTCACTGGTAAAGGTCCCATTGAGAACTTGTTTGATCACTTGGCTGAT 778 |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 748 GTCCAAGCCATTGTTACTGGTAAAGGTCCCATTGAGAACTTATTTGATCATTTGGCTGAT 807 Query 779 CCTGTGGCTAACAACGCCTGGGCTTATGCTACTAACTTTGTCCCCGGAAAGTAATTGTCA 838 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || Sbjct 808 CCTGTGGCTAACAACGCCTGGTCTTACGCTACTAACTTTGTCCCCGGAAAGTAATTATCT 867 Query 839 TATGTATTTCCTTCATAATCT 859 ||||||||| ||||||||||| Sbjct 868 TATGTATTTGCTTCATAATCT 888 > AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II light harvesting complex gene 2.3 | chr3:10255947-10257011 FORWARD LENGTH=946 Length=946 Score = 839 bits (454), Expect = 0.0 Identities = 688/802 (86%), Gaps = 11/802 (1%) Strand=Plus/Plus Query 34 AATGGCTACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTC 93 |||||| || ||||| ||||| || || || ||||| ||||||||| |||| ||||| || Sbjct 55 AATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATC 114 Query 94 CAACGACCTCCTCCGCAAGGTTGGTGTTTCC---GGTGGTGGCCGTGTGACCATGCGTCG 150 |||||| ||||||||||| | || | ||| || |||||||| | | ||||||||| Sbjct 115 CAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCG 174 Query 151 TACCGTCAAGTCTACTCCTCAAAGCATCTGGTATGGACCAGACCGTCCCAAATACTTGGG 210 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | || Sbjct 175 TACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGG 234 Query 211 ACCATTCTCGGAGAACACACCATCGTACTTAACCGGAGAATACCCCGGAGACTACGGCTG 270 |||||| || || ||||||||||| ||| |||||||||||||||| ||||||||||| || Sbjct 235 ACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTG 294 Query 271 GGACACCGCTGGACTCTCAGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAGGT 330 |||||||||||| |||||||| || || || |||||||| ||||| |||||||| || || Sbjct 295 GGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGT 354 Query 331 AATCCACAGCAGATGGGCTATGTTGGGTGCTCTT-GGCTGCACATTCCCTGAGATTCTCT 389 |||||||| |||||||| |||||||| ||| || |||||||| |||||||| ||||||| Sbjct 355 GATCCACAGTAGATGGGCAATGTTGGGAGCT-TTAGGCTGCACCTTCCCTGAAATTCTCT 413 Query 390 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCGGGTTCTCAGATCTTCT 449 | || ||||| || |||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct 414 CAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCT 473 Query 450 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 509 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 474 CAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 533 Query 510 CCATCTGGGC-TACTCAAGTTGTGCTCATGGGCTTCATTGAAGGCTACAGAATCGGAGGT 568 | || ||||| | |||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 534 CTATATGGGCGTG-TCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 592 Query 569 GGACCACTCGGAGAAGGGCTTGACCCACTTTACCCCGGAGGTGCGTTCGACCCTTTGAAC 628 || || || || |||||||||||||| |||||||| || || || |||||||| |||||| Sbjct 593 GGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAAC 652 Query 629 TTGGCAGAGGATCCAGAGGCCTTCTCTGAGCTGAAGGTGAAGGAGCTCAAGAACGGTCGT 688 || || ||||||||||| || || || ||| |||| ||||||||||| || ||||||||| Sbjct 653 TTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGT 712 Query 689 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTCACTGGTAAAGGTCCC 748 ||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct 713 CTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCG 772 Query 749 ATTGAGAA-CTTGTTTGATCAC-TTGGCTGATCCTGTGGCTAACAACGCCTGGGCTTATG 806 || || || || ||| |||||| ||| | || |||||||||||||| || |||||||| | Sbjct 773 ATCGAAAATCT-GTTCGATCACATTG-CAGACCCTGTGGCTAACAATGCTTGGGCTTACG 830 Query 807 CTACTAACTTTGTCCCCGGAAA 828 | || ||||| ||||||||||| Sbjct 831 CCACCAACTTCGTCCCCGGAAA 852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41895278598 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5