BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930849
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05380.1 | Symbols: GRP3S | glycine-rich protein 3 short iso... 520 5e-147
AT2G05530.1 | Symbols: | Glycine-rich protein family | chr2:20... 231 3e-60
AT2G05440.2 | Symbols: ATGRP9, GRP9 | GLYCINE RICH PROTEIN 9 | ... 121 6e-27
> AT2G05380.1 | Symbols: GRP3S | glycine-rich protein 3 short isoform
| chr2:1966816-1968037 FORWARD LENGTH=603
Length=603
Score = 520 bits (281), Expect = 5e-147
Identities = 356/392 (91%), Gaps = 5/392 (1%)
Strand=Plus/Plus
Query 1 TAAGCAGTATTTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTTTGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 TAAGCAGTATTTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTTTGCAT 75
Query 61 TTCTTTTCATCGTCTCAGAAATGGCCGCAGCGGGCACGGTGAAGTCAGAGAGTGAGGAAA 120
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 76 TTCTTTTCATCGTCTCAGAAATGGCTGCCGCGGGCACGGTGAAGTCAGAGAGTGAGGAAA 135
Query 121 CTGTGCAACCTGATCAACATGGTGGTCGCTACGGTGACAATgga-g-gctaca-gcggag 177
||||| ||||||| |||||||||||| | | ||||||||||||| | | | | | ||
Sbjct 136 CTGTGAAACCTGAACAACATGGTGGTGGATTCGGTGACAATGGAGGAGGAAGATACCAAG 195
Query 178 ggggaggaggccgcggtggccacggaggaggaggataccaaggaggaggaggaggagga- 236
| ||||| |||| |||||||||||||| |||||||||||||||||||||||| || |
Sbjct 196 GAGGAGGCGGCCATGGTGGCCACGGAGGGGGAGGATACCAAGGAGGAGGAGGACGA-TAC 254
Query 237 ggagggggaggtgggcgacgcggaggagggggaggTTACTGCCGCCACGGCTGCTGCTAC 296
||| || |||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 255 CAAGGAGGCGGTGGGCGACAAGGAGGAGGGGGAAGTTACTGCCGCCACGGCTGCTGCTAC 314
Query 297 AAAGGTTACCGTGGCTGCTCAAGGTGTTGTTCATACGCCGGAGAAGCTGTTCAGACTCAG 356
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 315 AAAGGTTACCATGGCTGCTCAAGGTGTTGTTCATATGCCGGAGAAGCGGTTCAGACTCAG 374
Query 357 CCTGGTCACTAAATCTACATAATATATCAACC 388
|||||||||||||||||||||||||||||||
Sbjct 375 TCTGGTCACTAAATCTACATAATATATCAACC 406
> AT2G05530.1 | Symbols: | Glycine-rich protein family | chr2:2029712-2030544
FORWARD LENGTH=615
Length=615
Score = 231 bits (125), Expect = 3e-60
Identities = 300/379 (79%), Gaps = 33/379 (9%)
Strand=Plus/Plus
Query 20 AATGGCTTCCAAGACTTT-GCTTCT-TTTGGGTCTCTTTGCATTTCTTTTCATCGTCTCA 77
||||||||||||| |||| | |||| ||| ||||| |||||| ||||| || ||||| ||
Sbjct 43 AATGGCTTCCAAGGCTTTAG-TTCTGTTT-GGTCTATTTGCAGTTCTTCTCGTCGTCACA 100
Query 78 GAA-ATG--GCCGCAGCGGGCACGGTGAAGTCAGAGAGTGAGGAAACTGTGCAACCTGAT 134
||| || || ||| | || || |||||||||||||||| |||||| ||||||||||||
Sbjct 101 GAAGTTGCCGCTGCATCCGGTACAGTGAAGTCAGAGAGTGGGGAAACCGTGCAACCTGAT 160
Query 135 CAACATGGTGGTCGCT-ACGGTGACAATggaggctacagcggagggggaggaggccgcgg 193
||| || ||| || | |||| | |||||||||||||| |||| |||||| ||
Sbjct 161 CAATATAATGG-CGGTCACGGCGGCAATGGAGGCTACAACGGA---GGAGGA------GG 210
Query 194 tggccacggaggaggaggatac-caa-ggaggagg--agga-ggaggaggagg--ggga- 245
| | ||||||||||||| | | ||| |||||||| | | ||||||||||| |
Sbjct 211 TTACAACGGAGGAGGAGG-T-CACAACGGAGGAGGTTACAACGGAGGAGGAGGATACAAT 268
Query 246 ggtgg-gcgacgcggaggaggggga-ggTTACTGCCGCCACGGCTGCTGCTACAAAGGTT 303
|| || | ||| ||||||| | | |||||||| ||| | ||||| ||||||| |||||
Sbjct 269 GGAGGAG-GACACGGAGGA-AGACATGGTTACTGTCGCTATGGCTGTTGCTACAGAGGTT 326
Query 304 ACCGTGGCTGCTCAAGGTGTTGTTCATACGCCGGAGAAGCTGTTCAGACTCAGCCTGGTC 363
||| |||||| |||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 327 ACCATGGCTGTTCAAGGTGTTGTTCGTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTC 386
Query 364 ACTAAATCTACATAATATA 382
||||||| || | ||||||
Sbjct 387 ACTAAAT-TAAACAATATA 404
> AT2G05440.2 | Symbols: ATGRP9, GRP9 | GLYCINE RICH PROTEIN 9
| chr2:1993082-1994166 FORWARD LENGTH=727
Length=727
Score = 121 bits (65), Expect = 6e-27
Identities = 154/194 (79%), Gaps = 17/194 (9%)
Strand=Plus/Plus
Query 11 TTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTT-TGCATTTCTTTTCA 69
||| || ||||||||||||||| ||||| |||| || |||||||| | || ||||| ||
Sbjct 44 TTGCAA-AAAATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCT-CAGTTCTTCTCG 101
Query 70 TCGTCTCAGAAATG---GCCGC-A-G----CGGGCACGGTGAAGTCAGAGAGTGAGGAAA 120
||||||| ||| || ||||| | | |||||| ||||||| |||||||||||||||
Sbjct 102 TCGTCTCCGAAGTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGAGTGAGGAAA 161
Query 121 CTGTGCAACCTGATCAACATGGTGGTCGCTACGGTG-ACAATggaggctacagcggaggg 179
||||||||||||| |||| ||| || |||| | ||| ||| || | || |||||||
Sbjct 162 CTGTGCAACCTGAAGGTTATGGCGGTGGCCACGGAGGACA-TGGTGG-T-CA-CGGAGGG 217
Query 180 ggaggaggccgcgg 193
|||||||||| |||
Sbjct 218 GGAGGAGGCCACGG 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18297460636
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5