BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930996
Length=473
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00516.1 | Symbols: NAD1C, NAD1 | NADH dehydrogenase 1C | ch... 93.5 2e-18
AT2G07786.1 | Symbols: | pseudogene, similar to NADH dehydroge... 93.5 2e-18
> ATMG00516.1 | Symbols: NAD1C, NAD1 | NADH dehydrogenase 1C |
chrM:143219-147048 REVERSE LENGTH=318
Length=318
Score = 93.5 bits (50), Expect = 2e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 1 TGGGAAGATCTAGGATAGGCAGCCAACCTCCTGGAAAGAACAATGTGCATAGACCA 56
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 56 TGGGAAGATCTAGGATAGGCGGCCAACCTCCTGGAAAGAACAATGTGCATGGACCA 1
> AT2G07786.1 | Symbols: | pseudogene, similar to NADH dehydrogenase
(ubiquinone), blastp match of 91% identity and 9.4e-39
P-value to GP|903844|gb|AAA70292.1||M63034 NADH dehydrogenase
(ubiquinone) {Oenothera berteriana} | chr2:3399657-3399912
REVERSE LENGTH=256
Length=256
Score = 93.5 bits (50), Expect = 2e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 1 TGGGAAGATCTAGGATAGGCAGCCAACCTCCTGGAAAGAACAATGTGCATAGACCA 56
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 56 TGGGAAGATCTAGGATAGGCGGCCAACCTCCTGGAAAGAACAATGTGCATGGACCA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22504897856
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5