BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931207
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33670.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 545 3e-154
AT1G33610.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 372 6e-102
> AT1G33670.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:12201963-12203408 FORWARD LENGTH=1446
Length=1446
Score = 545 bits (295), Expect = 3e-154
Identities = 1063/1421 (75%), Gaps = 103/1421 (7%)
Strand=Plus/Plus
Query 21 ATGAACTCTTGCTCATTCACTCTTTTCATCTTGGCCGCCATTATCTTTCTCCGGTGTTTA 80
||||||||||| || ||| |||| ||| |||| | ||||||||||||||||||||
Sbjct 1 ATGAACTCTTGTTCCTTCCCTCTCTTCCTCTT---TG---TTATCTTTCTCCGGTGTTTA 54
Query 81 AGTTCCACTAGAGCTGCCACATGTCATCCTGATGACGAGGCAGGTCTCTTAGCCTTCAAA 140
|||||||| |||||||||||||||||||||||||| | || ||||| ||||| ||||||
Sbjct 55 AGTTCCACGGGAGCTGCCACATGTCATCCTGATGACAAAGCGGGTCTTTTAGCTTTCAAA 114
Query 141 TCGGGTATAACCCGAGATCGTTTGGGCATTTTTAGC-CAGTGGAAGAAAGGTACTC-CAT 198
||||||||||||| ||||| || ||| ||| | ||| || ||| |||||| || | | |
Sbjct 115 TCGGGTATAACCCAAGATCCTTCGGGTATTCTCAGCTCA-TGGCAGAAAGATATTGAC-T 172
Query 199 GTTGTTCATGG-ATGGGTGTCATTTGCATCAC--C-A---A---CGACCGCGTCACCAC- 247
| || || ||| | || | || ||||| || | | | | ||||||||||||||
Sbjct 173 GCTGCTCCTGGTACGG-TATCTTTTGCCTCCCTACGATTCATGGCGACCGCGTCACCATG 231
Query 248 ACTGAGAATAAG-CGGCTCTACCGTTCTTGGCCAAAGCGT-CGTTTCCGGCACAATCTCA 305
| || | || || ||| ||| | | |||| ||| | | | | |||||||| ||||||
Sbjct 232 A-TG-GCATTAGACGGAAATACGGATGTTGGTGAAACCTTTC-TCTCCGGCACTATCTCA 288
Query 306 CCGTCT-CTGGCCAAACTTCAGCACCTCGAGGGGGTTTACTTTACCTATCTTCAAAATAT 364
|||| | || |||||||| || |||||| | | | || | | ||| |||||| ||| ||
Sbjct 289 CCGT-TGCTCGCCAAACTCCATCACCTCAACGAGATTCGCCTCACCAATCTTCGAAAGAT 347
Query 365 TACAGGGTCTTTTCCCCAATTTCTTTTCAAATTACCAAAGTTAAAGTA-TATTGACTTA- 422
|| || ||||||||||| || || ||||||||||||||| ||| | | | || |||||
Sbjct 348 CACTGGATCTTTTCCCCACTTCCTCTTCAAATTACCAAAGCTAAGG-ACTGTTTACTTAG 406
Query 423 ACGGGTA-CTCGCCTCTCCGGTCCCCTTCC-GACTAACATCGATGCGCTAAGCCAGTTGG 480
| | || | || ||||| ||||||||||| | | ||||||| ||| ||||| | ||||
Sbjct 407 A-GAATAAC-CGTCTCTCTGGTCCCCTTCCTGCC-AACATCGGTGCACTAAGTAATTTGG 463
Query 481 AAGAGTTA-ATTCTGGAGG-ACAACCAGTTCA-CTGGTCCAATCCCGACTTCAATATCTA 537
|| | || | | ||| || | |||| ||||| | ||| | ||||| | ||| || ||||
Sbjct 464 AA-ATTTTGAGTGTGGCGGGA-AACCGGTTCAGC-GGTTCGATCCCAAGTTCGATGTCTA 520
Query 538 ATTTGACTCGGTTAACTTGGT-TCA-GTCTCCGTGGAAACCGCATCTCTGGCACCATCCC 595
| || ||| | ||| || ||| | ||| || |||||| | ||||||| | ||||
Sbjct 521 AGTTAACTAGCTTA-CTCCAACTCAAG-CTCAACGGTAACCGCCTTTCTGGCATCTTCCC 578
Query 596 AGATATTTTCAAATCCATGACG-CAGCTTGGATTTCTCGCTCTCTCCCGCAATC-GATTA 653
||| || |||||||||||| || || ||| ||||||| | ||||||| |||| | ||||
Sbjct 579 AGACATATTCAAATCCATG-CGGCAACTTCGATTTCTTGATCTCTCCAGCAA-CAGATTC 636
Query 654 TCCGGGAAAC-TTCCTCCGTCTTTTGCATCGCTTGCGCCAAGTCTCGTGGT-CC-TCGAA 710
|| || |||| ||||| | || ||||||| ||||| || | ||| | | || | ||
Sbjct 637 TCTGG-AAACCTTCCTTCATCGATTGCATCTCTTGCACCGACTCTT-TC-TACCCTTGAG 693
Query 711 CTAAACCAAAACAATCTCTCGGGGAAGATCCCTAACTATTTATCAAGATTCAAGGAGATG 770
| ||| ||||| || ||||||| ||||| |||||||||| |||||| || |
Sbjct 694 GTGGGCCATAACAAGCTATCGGGGACTATCCCGGACTATTTATCGAGATTCGAGCTTCTC 753
Query 771 TCCTCATTGTATCTCTCCAAGAATCAATACTCTGGGGTCGTGCCAAAGAGTTTCGCCAAT 830
||| |||| ||||||| | |||| ||| | ||||||||||| | |||||| ||||||
Sbjct 754 TCCGCATTAAATCTCTCTAGGAATGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAAT 813
Query 831 ATGACCAA-ACTTAATCAT-CTTGACCTCTCCCACAATCTTCTAACCGGTCCATTCCCAG 888
||||||| | ||| || | ||||| |||||||||||||| || |||||||||||||| |
Sbjct 814 CTGACCAACA-TTA-TCTTTCTTGATCTCTCCCACAATCTGCTTACCGGTCCATTCCCTG 871
Query 889 ACTTGAAGATGATC-GATAAC-ATTATTTACGCTTTGGATCTATCGTACAACCGATTCCA 946
|||||| | || | | | | ||| ||| |||| |||||||||||||| ||
Sbjct 872 TCTTGAAC-TCATTAGGCATCGAATATCTAC-------ATCTTTCGTACAACCGATTTCA 923
Query 947 CCTAAAAACAATACC-GAAATGGGTGACCTCT-TC-ACGATCCATCCACTCGTTGAAGCT 1003
||| ||||||| || ||| |||||||||| | || | | || ||| |||| ||||||||
Sbjct 924 CCTTGAAACAATCCCCGAA-TGGGTGACCT-TGTCGAAGTTC-ATCTACTCATTGAAGCT 980
Query 1004 AGTTAAATGCGGGATCAAGATGAGATTTGAAGATTGGAAGCCAG-AGGGAACAAAACTTT 1062
| ||||| |||||||| ||||| || || |||||| ||||| || | || ||||
Sbjct 981 TGCAAAATGTGGGATCAAAATGAGCTTAGACCATTGGATGCCAGCAG--A-CACCTCTTT 1037
Query 1063 TTTCCG--ACATCAATCTTTCAGAAAACGAGATCTCAGGGAGTCCAACATGGTTTCTTAA 1120
| || |||| || |||| ||||||||||||||||||||||||| | ||||| ||||
Sbjct 1038 CTACCATCACATTGATTTTTCGGAAAACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAA 1097
Query 1121 CAACGCA-GAGAATCTTATGG---AGTTTCAAGCGTCAGGGAACAAACTCC-GATTCGAC 1175
| | | | | || | |||||| |||| || || | ||||||||||||| | ||||||
Sbjct 1098 CCA-G-ATG-GATT-TTATGGTGGAGTTCCATGCACCGGGGAACAAACTCCAG-TTCGAC 1152
Query 1176 ATGGGGAAGCTGAAA-TTCAAAAAAT-CGTTGAGA-CTATTAGATATGTCAAGGAATTTG 1232
|||||||||| ||| || || | | |||| | | | ||| |||||||||| |||
Sbjct 1153 TTGGGGAAGCT-AAAGTTTGGAATCTTC-TTGAAAACCCTG-GATTTGTCAAGGAACTTG 1209
Query 1233 GTATTTGGGAAGGTACCAACAACCGTGGCTGGATTGGAAAAACTCAACGTAAGTCACAAC 1292
||||||||||||||||| || ||| | || || | | ||| ||| | ||||| |||
Sbjct 1210 GTATTTGGGAAGGTACCGGTGACGGTGACCAGACTGCAGACACTAAACTTGAGTCAAAAC 1269
Query 1293 CAACTTTGCGGAAAGCTTCCGGT-GACAAAGTTCAAGGCCAATACGTTTGCTGG-TAACG 1350
|| ||||||||||||||||| | |||||||||| ||| | | | |||| | | ||||
Sbjct 1270 CATCTTTGCGGAAAGCTTCCA-TCGACAAAGTTCCCGGCTAGTGCTTTTG-TCGATAACA 1327
Query 1351 ACTGTCTCTGCGGCTCTCCACTTTCTCCTTGTAAAGCTTAG 1391
| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1328 AGTGTCTTTGCGGCTTTCCACTTTCTCCTTGTAAAGCTTAG 1368
> AT1G33610.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:12188910-12190418 FORWARD LENGTH=1509
Length=1509
Score = 372 bits (201), Expect = 6e-102
Identities = 645/850 (76%), Gaps = 68/850 (8%)
Strand=Plus/Plus
Query 573 AACCGCATCTCTGGCACCATCCCAGATATTTTCAAATCCATGACGCAGCTTGGATTTCTC 632
|||||| |||||||||||||||| ||||||||| ||||||||| | ||| |||||||
Sbjct 625 AACCGCCTCTCTGGCACCATCCCGGATATTTTCGAATCCATGAAGTTGCTCAAATTTCTC 684
Query 633 GCTCTCTCCCGCAATCG-ATTATCCGGGAAACTTCCTCCGTCTTTTGCAT-CGCTTGCGC 690
| ||||||| |||| || ||| | |||||||||||||| || |||| | | || || |
Sbjct 685 GATCTCTCCAGCAA-CGAATTCTACGGGAAACTTCCTCTATCGATTGC-TACACTGGCAC 742
Query 691 CAAGTCTCGTGGTCCTCGAACTAAACCAAAACAATCTCTC-GGGGAAGATCCCTAACTAT 749
| | ||| ||| |||| || | | ||| ||||||||||| |||| |||||| ||||||
Sbjct 743 CGACACTCCTGGCCCTCCAAGTGAGCCAGAACAATCTCTCTGGGG-CGATCCCAAACTAT 801
Query 750 TTATCAAGATTCAAGGAGATGTCCTCA-TT-GTATCTCTCCAAGAATCAATACTCTGGGG 807
||||||||||||| || | | | || | ||||||||||||| | | ||| ||||
Sbjct 802 ATATCAAGATTCAACAAGCT-TGAAAAGTTAG-ATCTCTCCAAGAACCGGTTCTCGGGGG 859
Query 808 TCGTGCC-AAAGAGTTTCGCCAATATGACCAA-ACTTAATC-ATCTTGACCTCTCCCACA 864
| ||||| ||| |||||| |||| | ||||| | |||| | ||||||| ||||| ||||
Sbjct 860 TTGTGCCTCAAG-GTTTCGTCAATCTCACCAATA-TTAA-CAATCTTGATCTCTCTCACA 916
Query 865 ATCTTCTAACCGGTCCATTCCCAGACTTGAAGATGATCGATAACATTATTTACGCT-TTG 923
||||||||||||||| ||| || |||||| | | || |||| ||| | | ||
Sbjct 917 ATCTTCTAACCGGTCAATTTCCTGACTTG-A-CCG-TC---AACACTATCGAATATCTT- 969
Query 924 GATCTATCGTACAACCGATTCCACCTAAAAACAATACCGA-AATGGGTGACC-TCTT-CA 980
||||| || ||||||| ||| || ||| |||| || || | ||||||||||| | || |
Sbjct 970 GATCTCTCTTACAACCAATTTCAACTAGAAACGATTCC-ACAATGGGTGACCTTGTTGC- 1027
Query 981 CGATCCATCCACTCGTTGAAGCTAGTTAAATGCGGGATCAAGATGAGATTTGAAGATTGG 1040
||| | || || ||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 1028 CGA-GCGTCTTCTTGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGATGATTGG 1086
Query 1041 AAGCCAGAGGGAACAAAAC-TT-T-TTTCC--GACATCAATCTT-TCAG-AAAACGAGAT 1093
||||||| ||||| | || | | || |||| || || || | ||||||||||
Sbjct 1087 AAGCCAG-CGGAAC----CGTTGTACTACCATTACATTGAT-TTGTC-GAAAAACGAGAT 1139
Query 1094 CTCAGGGAGTCCA-ACATGGTTTCTT-AAC-A-ACGCAGAGAATCTTATGGAGTTTCAAG 1149
||||||||||| | | | || ||||| ||| | ||| || | |||| | ||||||| |
Sbjct 1140 CTCAGGGAGTCTAGA-AAGG-TTCTTGAACGAGACG-AG-GTATCTGCTTGAGTTTCGGG 1195
Query 1150 CGTCAGG-GAACAAACTCCGATTCGACATGGGGAAGCTGAA--ATT-C-AAAAAATCGTT 1204
|| | || ||||||||| |||||||| |||||||| || || || | | | | | |
Sbjct 1196 CGGC-GGAGAACAAACTTCGATTCGATATGGGGAACCT-AACGTTTCCGAGGACA-C-TA 1251
Query 1205 GAGACTATTAGATATGTCAAGGAATTTGGTATTTGGGAAGGTACC-AACAACCGTGGCTG 1263
| ||| || ||| |||||||||| ||||||||||| ||||| || | || |||||||
Sbjct 1252 AAAACT-TTGGATCTGTCAAGGAACTTGGTATTTGGTAAGGTGCCTGTC-ACGGTGGCTG 1309
Query 1264 GAT-TGGAAAAACTCAACGTAAGTCACAACCAACTTTGCGGA-AAGCTTCCGGTGACAAA 1321
| | | ||| ||| ||| ||||||| ||||| ||||| ||| || ||||| ||||||
Sbjct 1310 G-TCTACAAAGACTAAACTTAAGTCAAAACCATCTTTGTGGAGAA-CTTCCTACGACAAA 1367
Query 1322 GTTCAAGGCCAATACGTTTGCTGGTAACGACTGTCTCTGCGGCTCTCCACTTTCTCCTTG 1381
|||| ||| | | || || |||||||||||||| || ||||||||||||||||||||
Sbjct 1368 GTTCCCGGCTAGCGCCTTCGCCGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTG 1427
Query 1382 TAAAGCTTAG 1391
||||||||||
Sbjct 1428 TAAAGCTTAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5